Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02128 ATGATCTTCAACACTTCTACTTTTTCTTCTTCACCACATTGTCATCATCAACAATACTCTGTTCTTGAAAATGAGAACAACAAAAACCCTAAAGATATTGTTGATCAACCAAACAATATGATCAACAATTTTGTTTCTTCGAAAAACAACCTTGTTCTTCAAGAACCTCAAACAAACAACAATCATACACAAGGCCGCATCTTGAAAATCACTTTTTTTATGTCTTCTGCTCGTAATGATAACAATAACAATAATAATAATGCTGTTGTTGTTGTTGTTGATCATGGTGAGAAGAAACAACAGAACATGAAATCTTTTTCATGCCATGTTTGTAACAAATCTTTTTCATCAAACAAAGCTTTGAACGGCCACATGAGATCGCATACTCAAAAGGGTTTCAAGAAAAGTACTACTACTACTACTGCATCACCATTATCATCATCTTCGTTGTTGGAATTGGAACAGAACAAGAAGAGGAATCATCATCATCAAGATCATGATCAGTTACCACCGGCTATTGACTTGTCGAATTATTTGCCTCCAAGAACCTACAAGACCAATAAACGGCGCAACAGATTTTTTAATGACGATGATGCTCGTAACGCTGCTCAAGCGTTGTTGGATATGTCTCGCGGAAAGTTTCTGAATTTCGATGATGATGTGAATAACCGTGACTGTAGAAGGATCAAGCTTTCCAATGAAGAAGAAAGGTAG 714 0.3599 MIFNTSTFSSSPHCHHQQYSVLENENNKNPKDIVDQPNNMINNFVSSKNNLVLQEPQTNNNHTQGRILKITFFMSSARNDNNNNNNNAVVVVVDHGEKKQQNMKSFSCHVCNKSFSSNKALNGHMRSHTQKGFKKSTTTTTASPLSSSSLLELEQNKKRNHHHQDHDQLPPAIDLSNYLPPRTYKTNKRRNRFFNDDDARNAAQALLDMSRGKFLNFDDDVNNRDCRRIKLSNEEER 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02128 237 Pfam C2H2-type zinc finger 106 129 - -
Trre1g02128 237 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Trre1g02128 237 Gene3D Classic Zinc Finger 102 129 - -
Trre1g02128 237 SMART c2h2final6 106 128 IPR013087 -
Trre1g02128 237 SUPERFAMILY beta-beta-alpha zinc fingers 104 131 IPR036236 -
Trre1g02128 237 MobiDBLite consensus disorder prediction 154 169 - -
Trre1g02128 237 MobiDBLite consensus disorder prediction 132 153 - -
Trre1g02128 237 FunFam GDNF-inducible zinc finger protein 1 103 130 - -
Trre1g02128 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Trre1g02128 237 MobiDBLite consensus disorder prediction 118 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02128 Trre-Chr1 16966185 16966898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02128 108 133 C2H2 Transcription Factor Family AT5G61470 69.231 9.46e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02128 zf-C2H2_6 2.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02128 - K09228 cam:101497742 75.0997