Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02127 ATGAACAAATCTTCTTCATCATCTCTTGAAAATGATCATGATCATGCACTTGCAAATGTGAAACAACCAGGTTCAAACAATCACAAATGTGATTTGTGTAAAAGAGTATTCACCTCTGGTAATGCTCTTGGTGGCCATAAAACCGCTCATCGCTCCCACATTCTTCCAACAAAGAAGAGTTATTCATGTCGTCTTTGCAACAAATCTTTTTCATCAATCAAAGCTTTGAACGGACACATGAAATGGCATAGTAAAAAAGGTTCCAAGGGTGTTGCGTCATCCTTGGAACAATCGAGTAATTATGATGACCAAAAACCGGCTATTGACTTGTTGACTTATTTGCCACCAAGGTTGTATCGTACCAAGAAAAGATGCAGGAAAATTGTCGATGATAATGATAATGAAGCCGTTACTGCTGCTCAAATCCTCTTCGATATGTCTCACTCTCGGGACTGA 456 0.3904 MNKSSSSSLENDHDHALANVKQPGSNNHKCDLCKRVFTSGNALGGHKTAHRSHILPTKKSYSCRLCNKSFSSIKALNGHMKWHSKKGSKGVASSLEQSSNYDDQKPAIDLLTYLPPRLYRTKKRCRKIVDDNDNEAVTAAQILFDMSHSRD 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02127 151 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Trre1g02127 151 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Trre1g02127 151 Gene3D Classic Zinc Finger 26 83 - -
Trre1g02127 151 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 50 IPR013087 -
Trre1g02127 151 SUPERFAMILY beta-beta-alpha zinc fingers 24 84 IPR036236 -
Trre1g02127 151 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 59 127 - -
Trre1g02127 151 FunFam Zinc finger 45-like 57 84 - -
Trre1g02127 151 SMART c2h2final6 61 83 IPR013087 -
Trre1g02127 151 SMART c2h2final6 28 50 IPR013087 -
Trre1g02127 151 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Trre1g02127 151 Pfam C2H2-type zinc finger 28 52 - -
Trre1g02127 151 Pfam C2H2-type zinc finger 61 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02127 Trre-Chr1 16955887 16956342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02127 28 83 C2H2 Transcription Factor Family AT5G61470 36.232 2.05e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02127 zf-C2H2_6 4.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02127 - - cam:101497742 107.457