Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02124 ATGGTTCGTAATTGTAACTGCTTCAATCTCATCTTCGCTGTGTTCTTCGCAATTTTCATTTCTCAGGGTTTCGCATTCACTGATCCACTTGACGTCGCAGCTCTCAAGGATATGTACGGTAGCCTAAATAACCCGCAAGTGCTGCAAGGATGGAACGGCGGTGATCCTTGTGAGGAGGCTTGGACAGGAGTAGCTTGTTCGGGGTCCTCGGTTATACATCTGAAACTTCAAGGAATGAACCTCACCGGATCTCTTGGAGCCGCGCTGTATAATCTACAAAGTTTGAAGATATTTGATGTCAGTTCCAACAGCATAATGGGTGAAATACCATATGGATTACCTCCAAATGCCACACATATAAACATGGCTTGCAACTATTTGAGCCAAAATATACCAAGTTCGTTATCAAACATGAAAAGACTTAGACATCTGAATTTAAGCCACAATTTCTTATATGGACCAATTGGAAATGTGTTCACAGGCTTAGATAATCTCAAAGAAATGGACCTTTCATATAATAATTTCACAGGAGATCTACCAAGTTCATTTGGTTCCTTGATAAACATTGAGAAATTGTTCCTGCAGAATAACAGATTTACTGGATCAGTCACATACCTGGCTGAGCTTCCACTCATTTATTTGAACATTCAAGAAAATCTGTTTAGTGGCATTCTTCCACAGCATTTTCAGTCCATTCCAAACTTATGGATTGGTAGCAATATGTTCCATGCAGTGGACGGCTCTCCTCCTTGGGGATTTCCTTTGGATGGTGTACCAGTTGAGCAAAATACCAGCCGCCCACCCACAACCCAGGCAAATGCCATCGAGAATTATGCTCCTCCTAAAGCAATAAAACAAAATAAGAAACAAATTGGTCCTGGAGGAATAGCTTTTATGGTTGGAGGGGGAACATTAATGGTAACAGGATTAGCGCTCTTCATTGCGATCAGTTTGAAAAAATTTCACACTCAGAGACCAAAAAGCTTTGTCTTCGAAAGCAACCACCGTACTTCATTTTCTGCTCATCCATTTCCTTCTAATTCAATCAGTGCAGTCAAAGAAATCTCTCCTACGGAACAAGATGATAGCCTGCAAATCCCACCTTTCAATGCTGCATCTCTTTTGAATCCAAGGCGATTGCCGTCCCAGAAACATAAAAGGATGGGAGAAACGTCAAGAAGAAGTTTTTCTGAAAGAGACAAATTCACCGGAAGGACGAAGGTTTACACAGTAGCTGAGGTTCAGTTGGTTACTAACAACTTCAGTGAAGACAACCTTCTCGGAGTAGGCTCTCTTGGGCCTGTTTACAGAGCAGAGTTACCAGATAACAAAGTTTTGGCTGTGAAGAACATCCAAATGGCAGGGTTATCTTTCAGTGAAGAGGAAAAGTTCTTAGACGTGGTCTGTACCGCTTCCCGTCTGAAGCACCCCAACATCGTTGCACTTAAAGGTTACTGTTTGGAGCACGGACAACATCTTCTTGTCTACGACTATGTCAGAAACTTAACTCTAGACGATGCTCTACACAGTGCATCATACAAACCTTTATCTTGGGGACTCCGTCTACGAATCGCTATAGGTGTTGCACAAGCTCTAGATTATCTGCACTCCACGTTCTCCCCTCCTGTCACCCATGGCAACTTGAAGGCTGCCAATATTCTACTGGATGAAAATCTGATGCCTCGTGTTTCTGATTGTGGCTTGGATATCTTAAGACCACTGACCAACACGAAAGCCAAAGCTCGGGCTTCTGAGATTGCTATTAGAGATAGTGGGTACGATTCACCTAATCATGGTCAACCTGGAATCAGCAGCACAAAGAGCGACATATTTTCCTTTGGGGTGTTGCTTTTGGAGCTGTTATCAGGAAGAAAACCTTTCGAAAGTTTTATGCCAAAGGAAGAGCAATATCTAGCAAATTGGGCTTCATCAAGGCTTCATGATAGCGAGAGTTTGGAGCAGATGGTAGATCCAGCAATTAAAAGAACATTCTCATCTAAAGCTCTTTCTCGTTATGCTGATATAATTTCTCTATGCACTCAGCCTGCAAAGGAATTCAGACCTCCAATGTCTGAAATAGTGGACTCTCTTGTATCTTTTATGCAAAAGCTCAATGTGTCAAAGAGTGTTGGAGGGTTAGCAGATGGAACTGAACTTGACCCACTTGACAGATCTTTTCGTACAACCACCTCCCGCTTTATACCTTCACCATCATTGAGCTATGTATCTGCTTGA 2235 0.4237 MVRNCNCFNLIFAVFFAIFISQGFAFTDPLDVAALKDMYGSLNNPQVLQGWNGGDPCEEAWTGVACSGSSVIHLKLQGMNLTGSLGAALYNLQSLKIFDVSSNSIMGEIPYGLPPNATHINMACNYLSQNIPSSLSNMKRLRHLNLSHNFLYGPIGNVFTGLDNLKEMDLSYNNFTGDLPSSFGSLINIEKLFLQNNRFTGSVTYLAELPLIYLNIQENLFSGILPQHFQSIPNLWIGSNMFHAVDGSPPWGFPLDGVPVEQNTSRPPTTQANAIENYAPPKAIKQNKKQIGPGGIAFMVGGGTLMVTGLALFIAISLKKFHTQRPKSFVFESNHRTSFSAHPFPSNSISAVKEISPTEQDDSLQIPPFNAASLLNPRRLPSQKHKRMGETSRRSFSERDKFTGRTKVYTVAEVQLVTNNFSEDNLLGVGSLGPVYRAELPDNKVLAVKNIQMAGLSFSEEEKFLDVVCTASRLKHPNIVALKGYCLEHGQHLLVYDYVRNLTLDDALHSASYKPLSWGLRLRIAIGVAQALDYLHSTFSPPVTHGNLKAANILLDENLMPRVSDCGLDILRPLTNTKAKARASEIAIRDSGYDSPNHGQPGISSTKSDIFSFGVLLLELLSGRKPFESFMPKEEQYLANWASSRLHDSESLEQMVDPAIKRTFSSKALSRYADIISLCTQPAKEFRPPMSEIVDSLVSFMQKLNVSKSVGGLADGTELDPLDRSFRTTTSRFIPSPSLSYVSA 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02124 744 Pfam Leucine rich repeat 158 199 IPR001611 GO:0005515
Trre1g02124 744 Gene3D Transferase(Phosphotransferase) domain 1 500 712 - -
Trre1g02124 744 Gene3D Ribonuclease Inhibitor 29 253 IPR032675 -
Trre1g02124 744 SUPERFAMILY Protein kinase-like (PK-like) 397 697 IPR011009 -
Trre1g02124 744 ProSiteProfiles Protein kinase domain profile. 421 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02124 744 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 253 - -
Trre1g02124 744 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 699 IPR046959 -
Trre1g02124 744 Pfam Protein tyrosine and serine/threonine kinase 425 697 IPR001245 GO:0004672|GO:0006468
Trre1g02124 744 Pfam Leucine Rich Repeat 140 153 IPR001611 GO:0005515
Trre1g02124 744 Gene3D Phosphorylase Kinase; domain 1 382 498 - -
Trre1g02124 744 FunFam Leucine-rich repeat receptor-like protein kinase 499 708 - -
Trre1g02124 744 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trre1g02124 744 SUPERFAMILY L domain-like 34 236 - -
Trre1g02124 744 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 386 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02124 Trre-Chr1 16940080 16945386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02124 27 744 Strubbelig Receptor Gene Family AT5G06820 55.463 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre1g02124 PK_Tyr_Ser-Thr 1.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02124 - - tpra:123896060 1402.5