Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02123 ATGGTTCGTAATTGTAACTGCTTCAATCTCATCTTCGCTGTGTTCTTCGCAATTTTCATTTCTCAGGGTTTCGCATTCACTGATCCACTTGACGTCGCAGCTCTCAAGGATATGTACGGTAGCCTAAATAACCCGCAAGTGCTGCAAGGATGGAACGGCGGTGATCCTTGTGAGGAGGCTTGGACAGGAGTAGCTTGTTCGGGGTCCTCGGTTATACATCTGAAACTTCAAGGAATGAACCTCACCGGATCTCTTGGAGCCGCGCTGTATAATCTACAAAGTTTGAAGATATTTGATGTCAGTTCCAACAGCATAATGGGTGAAATACCATATGGATTACCTCCAAATGCCACACATATGAATTTAAGCCACAATTTCTTATATGGACCAATTGGAAATGTGTTCACAGGCTTAGATAATCTCAAAGAAATGGACCTTTCATATAATAATTTCACAGGAGATCTACCAAGTTCATTTGGTTCCTTGATAAACATTGAGAAATTGTTCCTGCAGAATAACAGATTTACTGGATCAGTCACATACCTGGCTGAGCTTCCACTCATTTATTTGAACATTCAAGAAAATCTGTTTAGTGGCATTCTTCCACAGCATTTTCAGTCCATTCCAAACTTATGGATTGGTAGCAATATGTTCCATGCAGTGGACGGCTCTCCTCCTTGGGGATTTCCTTTGGATGGTGTACCAGTTGAGCAAAATACCAGCCGCCCACCCACAACCCAGGCAAATGCCATCGAGAATTATGCTCCTCCTAAAGCAATAAAACAAAATAAGAAACAAATTGGTCCTGGAGGAATAGCTTTTATGGTTGGAGGGGGAACATTAATGGTAACAGGATTAGCGCTCTTCATTGCGATCAGTTTGAAAAAATTTCACACTCAGAGACCAAAAAGCTTTGTCTTCGAAAGCAACCACCGTACTTCATTTTCTGCTCATCCATTTCCTTCTAATTCAATCAGTGCAGTCAAAGAAATCTCTCCTACGGAACAAGATGATAGCCTGCAAATCCCACCTTTCAATGCTGCATCTCTTTTGAATCCAAGGCGATTGCCGTCCCAGAAACATAAAAGGATGGGAGAAACGTCAAGAAGAAGTTTTTCTGAAAGAGACAAATTCACCGGAAGGACGAAGGTTTACACAGTAGCTGAGGTTCAGTTGGTTACTAACAACTTCAGTGAAGACAACCTTCTCGGAGTAGGCTCTCTTGGGCCTGTTTACAGAGCAGAGTTACCAGATAACAAAGTTTTGGCTGTGAAGAACATCCAAATGGCAGGGTTATCTTTCAGTGAAGAGGAAAAGTTCTTAGACGTGGTCTGTACCGCTTCCCGTCTGAAGCACCCCAACATCGTTGCACTTAAAGGTTACTGTTTGGAGCACGGACAACATCTTCTTGTCTACGACTATGTCAGAAACTTAACTCTAGACGATGCTCTACACAGTGCATCATACAAACCTTTATCTTGGGGACTCCGTCTACGAATCGCTATAGGTGTTGCACAAGCTCTAGATTATCTGCACTCCACGTTCTCCCCTCCTGTCACCCATGGCAACTTGAAGGCTGCCAATATTCTACTGGATGAAAATCTGATGCCTCGTGTTTCTGATTGTGGCTTGGATATCTTAAGACCACTGACCAACACGAAAGCCAAAGCTCGGGCTTCTGAGATTGCTATTAGAGATAGTGGGTACGATTCACCTAATCATGGTCAACCTGGAATCAGCAGCACAAAGAGCGACATATTTTCCTTTGGGGTGTTGCTTTTGGAGCTGTTATCAGGAAGAAAACCTTTCGAAAGTTTTATGCCAAAGGAAGAGCAATATCTAGCAAATTGGGCTTCATCAAGGCTTCATGATAGCGAGAGTTTGGAGCAGATGGTAGATCCAGCAATTAAAAGAACATTCTCATCTAAAGCTCTTTCTCGTTATGCTGATATAATTTCTCTATGCACTCAGCCTGCAAAGGAATTCAGACCTCCAATGTCTGAAATAGTGGACTCTCTTGTATCTTTTATGCAAAAGCTCAATGTGTCAAAGAGTGTTGGAGGGTTAGCAGATGGAACTGAACTTGACCCACTTGACAGATCTTTTCGTACAACCACCTCCCGCTTTATACCTTCACCATCATTGAGCTATGTATCTGCTTGA 2163 0.4267 MVRNCNCFNLIFAVFFAIFISQGFAFTDPLDVAALKDMYGSLNNPQVLQGWNGGDPCEEAWTGVACSGSSVIHLKLQGMNLTGSLGAALYNLQSLKIFDVSSNSIMGEIPYGLPPNATHMNLSHNFLYGPIGNVFTGLDNLKEMDLSYNNFTGDLPSSFGSLINIEKLFLQNNRFTGSVTYLAELPLIYLNIQENLFSGILPQHFQSIPNLWIGSNMFHAVDGSPPWGFPLDGVPVEQNTSRPPTTQANAIENYAPPKAIKQNKKQIGPGGIAFMVGGGTLMVTGLALFIAISLKKFHTQRPKSFVFESNHRTSFSAHPFPSNSISAVKEISPTEQDDSLQIPPFNAASLLNPRRLPSQKHKRMGETSRRSFSERDKFTGRTKVYTVAEVQLVTNNFSEDNLLGVGSLGPVYRAELPDNKVLAVKNIQMAGLSFSEEEKFLDVVCTASRLKHPNIVALKGYCLEHGQHLLVYDYVRNLTLDDALHSASYKPLSWGLRLRIAIGVAQALDYLHSTFSPPVTHGNLKAANILLDENLMPRVSDCGLDILRPLTNTKAKARASEIAIRDSGYDSPNHGQPGISSTKSDIFSFGVLLLELLSGRKPFESFMPKEEQYLANWASSRLHDSESLEQMVDPAIKRTFSSKALSRYADIISLCTQPAKEFRPPMSEIVDSLVSFMQKLNVSKSVGGLADGTELDPLDRSFRTTTSRFIPSPSLSYVSA 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02123 720 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 362 474 - -
Trre1g02123 720 SUPERFAMILY L domain-like 34 212 - -
Trre1g02123 720 SUPERFAMILY Protein kinase-like (PK-like) 373 673 IPR011009 -
Trre1g02123 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 117 229 - -
Trre1g02123 720 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Trre1g02123 720 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 675 IPR046959 -
Trre1g02123 720 Gene3D Phosphorylase Kinase; domain 1 358 474 - -
Trre1g02123 720 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trre1g02123 720 ProSiteProfiles Protein kinase domain profile. 397 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02123 720 Gene3D Transferase(Phosphotransferase) domain 1 476 688 - -
Trre1g02123 720 Pfam Protein tyrosine and serine/threonine kinase 401 673 IPR001245 GO:0004672|GO:0006468
Trre1g02123 720 Gene3D Ribonuclease Inhibitor 29 229 IPR032675 -
Trre1g02123 720 FunFam Leucine-rich repeat receptor-like protein kinase 475 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02123 Trre-Chr1 16940080 16945386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02123 27 720 Strubbelig Receptor Gene Family AT5G06820 53.527 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre1g02123 PK_Tyr_Ser-Thr 1.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02123 - - tpra:123896060 1341.25