Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02116 ATGCCTTCTTCTAGTATTATCAAAAGCACAACAAATTCAACAATAACTCAACTTGAATCATTTCAACAACAACAAATCCATCACCATCTTCATCTTCATCATCAACAACAACAACAACAACAACATCAAAATCAACATCAACATAATCATCATATGCATGACCATCAAATTTCTTTTGGAATGATGCCATCTTCATCTTCATCTTCTATCCCTGGCAACTACTTAAGCAAAGATTCAAGTGCTTATGATTTAGGTGAATTGGATCAAGCATTTTTTTTGTATCTTGATGGACAATCACAAGCTGATCCTTCTAGTATTCAAGATCAAAGACAGAATTCATCTTCATCTTCAGGAATGAGACCACCACCAACTCTTAACATTTTTCCATCTCAACCAATGCATGTAGCACCACCACCATCATCATCCAATTCAAAGGGTAGCATGGGATTAACCTCTCCACAATCTAGTGGTTTAAAGAAAGCATCTCAACCGTCCATGGAGTTGGCAAACCAACGAAATGAAACCCTCTCTGCACCTGCACCACCAAAACTAGTCAAGAGGGAGAACAATCGTAAGGGTACAACTTCAAGTTCTGAACATGAAGGACCAAAAACACCAGATCCTAAGACTCTGAGAAGACTTGCTCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTTAGGAAAAAGGCTTATGTTCAGCAACTAGAAACAAGTAGGATTAAGCTTAATCAGCTTGAACAAGAGTTGCAGCGTGCTAGAACTCAAGGTGTGTTAATGAATGGAGGTGCACTTATGGGAGGAGACCAAGGAATTCCAATTTCTATGAATAGCATTAGCTCAGAGGCTGCAATGTTTGATGTGGAATATGGGAGGTGGTTAGAGGAGCACCACAGGCTAGTGTGTGAGCTAAGAGCAGCAGTTGATGAACATTTACATGAAAATGAGCTTAGATTATATGTGGAAAATTGCTTGGCTCACTATGATCAAGTAATTAACCTAAAAGCTCTTCTAGCTAGAACAGATGTGTTCCATCTTGTTTATGGAATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAGACCATCTGAACTCATTAAGATAATTGTAAGTCAAATTGAGCCACTTACTGAACAACAAATACTTGGAATATGTGGGTTGCAACAATCAACACAAGAGGCAGAAGAAGCACTTTCACAAGGGCTTGATGCACTCAACCAATCTCTTTCAGAGACTATAACATCAGACTCTTTGAGCTCTCCTCCTAATATGGCTAATTATATGGGACAAATGGCTCTTGCCATGAACAAGCTCTCCACTCTTGAAAGTTTTGTGAGACAGGCAGATAATCTGAGGCAACAAACAATTCATCGTCTGCATCAGCTGCTAACAACTCGTCAAGCTGCACGGTGTTTGGTTGCAATGTCGGAGTATTTCCATCGGCTTCGAGCATTGAGTTCTCTCTGGTTGACTCGCCCTCGCCAAGAATAG 1503 0.4059 MPSSSIIKSTTNSTITQLESFQQQQIHHHLHLHHQQQQQQQHQNQHQHNHHMHDHQISFGMMPSSSSSSIPGNYLSKDSSAYDLGELDQAFFLYLDGQSQADPSSIQDQRQNSSSSSGMRPPPTLNIFPSQPMHVAPPPSSSNSKGSMGLTSPQSSGLKKASQPSMELANQRNETLSAPAPPKLVKRENNRKGTTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARTQGVLMNGGALMGGDQGIPISMNSISSEAAMFDVEYGRWLEEHHRLVCELRAAVDEHLHENELRLYVENCLAHYDQVINLKALLARTDVFHLVYGMWKTPAERCFMWIGGFRPSELIKIIVSQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSETITSDSLSSPPNMANYMGQMALAMNKLSTLESFVRQADNLRQQTIHRLHQLLTTRQAARCLVAMSEYFHRLRALSSLWLTRPRQE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02116 500 PANTHER TRANSCRIPTION FACTOR TGA9 117 499 - -
Trre1g02116 500 MobiDBLite consensus disorder prediction 137 177 - -
Trre1g02116 500 Pfam Seed dormancy control 300 375 IPR025422 GO:0006351|GO:0043565
Trre1g02116 500 CDD bZIP_HBP1b-like 209 256 - -
Trre1g02116 500 FunFam BZIP family transcription factor 208 257 - -
Trre1g02116 500 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 212 227 IPR004827 GO:0003700|GO:0006355
Trre1g02116 500 MobiDBLite consensus disorder prediction 100 124 - -
Trre1g02116 500 MobiDBLite consensus disorder prediction 185 212 - -
Trre1g02116 500 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 207 251 IPR004827 GO:0003700|GO:0006355
Trre1g02116 500 MobiDBLite consensus disorder prediction 100 212 - -
Trre1g02116 500 SUPERFAMILY Leucine zipper domain 209 251 IPR046347 GO:0003700|GO:0006355
Trre1g02116 500 ProSiteProfiles DOG1 domain profile. 282 496 IPR025422 GO:0006351|GO:0043565
Trre1g02116 500 Coils Coil 228 255 - -
Trre1g02116 500 SMART brlzneu 205 271 IPR004827 GO:0003700|GO:0006355
Trre1g02116 500 Pfam bZIP transcription factor 209 247 IPR004827 GO:0003700|GO:0006355
Trre1g02116 500 MobiDBLite consensus disorder prediction 24 72 - -
Trre1g02116 500 Gene3D - 208 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02116 Trre-Chr1 16852003 16860476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02116 72 500 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 64.560 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre1g02116 DOG1 4.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02116 K14431 - gmx:100815176 740.339