LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g02115	ATGGGATTTTCTTTACCTATTGAAGAAGCAAAACAAAAAGAACAAGACCAAAGATTTTTAGGTTCCAATAACAATTCTATGATCATGCCTTCTTCTAGTATTATCAAAAGCACAACAAATTCAACAATAACTCAACTTGAATCATTTCAACAACAACAAATCCATCACCATCTTCATCTTCATCATCAACAACAACAACAACAACAACATCAAAATCAACATCAACATAATCATCATATGCATGACCATCAAATTTCTTTTGGAATGATGCCATCTTCATCTTCATCTTCTATCCCTGGCAACTACTTAAGCAAAGATTCAAGTGCTTATGATTTAGGTGAATTGGATCAAGCATTTTTTTTGTATCTTGATGGACAATCACAAGCTGATCCTTCTAGTATTCAAGATCAAAGACAGAATTCATCTTCATCTTCAGGAATGAGACCACCACCAACTCTTAACATTTTTCCATCTCAACCAATGCATGTAGCACCACCACCATCATCATCCAATTCAAAGGGTAGCATGGGATTAACCTCTCCACAATCTAGTGGTTTAAAGAAAGCATCTCAACCGTCCATGGAGTTGGCAAACCAACGAAATGAAACCCTCTCTGCACCTGCACCACCAAAACTAGTCAAGAGGGAGAACAATCGTAAGGGTACAACTTCAAGTTCTGAACATGAAGGACCAAAAACACCAGATCCTAAGACTCTGAGAAGACTTGCTCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTTAGGAAAAAGGCTTATGTTCAGCAACTAGAAACAAGTAGGATTAAGCTTAATCAGCTTGAACAAGAGTTGCAGCGTGCTAGAACTCAAGGTGTGTTAATGAATGGAGGTGCACTTATGGGAGGAGACCAAGGAATTCCAATTTCTATGAATAGCATTAGCTCAGAGGCTGCAATGTTTGATGTGGAATATGGGAGGTGGTTAGAGGAGCACCACAGGCTAGTGTGTGAGCTAAGAGCAGCAGTTGATGAACATTTACATGAAAATGAGCTTAGATTATATGTGGAAAATTGCTTGGCTCACTATGATCAAGTAATTAACCTAAAAGCTCTTCTAGCTAGAACAGATGTGTTCCATCTTGTTTATGGAATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAGACCATCTGAACTCATTAAGATAATTGTAAGTCAAATTGAGCCACTTACTGAACAACAAATACTTGGAATATGTGGGTTGCAACAATCAACACAAGAGGCAGAAGAAGCACTTTCACAAGGGCTTGATGCACTCAACCAATCTCTTTCAGAGACTATAACATCAGACTCTTTGAGCTCTCCTCCTAATATGGCTAATTATATGGGACAAATGGCTCTTGCCATGAACAAGCTCTCCACTCTTGAAAGTTTTGTGAGACAGGCAGATAATCTGAGGCAACAAACAATTCATCGTCTGCATCAGCTGCTAACAACTCGTCAAGCTGCACGGTGTTTGGTTGCAATGTCGGAGTATTTCCATCGGCTTCGAGCATTGAGTTCTCTCTGGTTGACTCGCCCTCGCCAAGAATAG	1587	0.4001	MGFSLPIEEAKQKEQDQRFLGSNNNSMIMPSSSIIKSTTNSTITQLESFQQQQIHHHLHLHHQQQQQQQHQNQHQHNHHMHDHQISFGMMPSSSSSSIPGNYLSKDSSAYDLGELDQAFFLYLDGQSQADPSSIQDQRQNSSSSSGMRPPPTLNIFPSQPMHVAPPPSSSNSKGSMGLTSPQSSGLKKASQPSMELANQRNETLSAPAPPKLVKRENNRKGTTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARTQGVLMNGGALMGGDQGIPISMNSISSEAAMFDVEYGRWLEEHHRLVCELRAAVDEHLHENELRLYVENCLAHYDQVINLKALLARTDVFHLVYGMWKTPAERCFMWIGGFRPSELIKIIVSQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSETITSDSLSSPPNMANYMGQMALAMNKLSTLESFVRQADNLRQQTIHRLHQLLTTRQAARCLVAMSEYFHRLRALSSLWLTRPRQE	528

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g02115	528	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	240	255	IPR004827	GO:0003700\|GO:0006355
	Trre1g02115	528	MobiDBLite	consensus disorder prediction	165	205	-	-
	Trre1g02115	528	Pfam	Seed dormancy control	328	403	IPR025422	GO:0006351\|GO:0043565
	Trre1g02115	528	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	235	279	IPR004827	GO:0003700\|GO:0006355
	Trre1g02115	528	CDD	bZIP_HBP1b-like	237	284	-	-
	Trre1g02115	528	Gene3D	-	236	286	-	-
	Trre1g02115	528	MobiDBLite	consensus disorder prediction	51	100	-	-
	Trre1g02115	528	SMART	brlzneu	233	299	IPR004827	GO:0003700\|GO:0006355
	Trre1g02115	528	MobiDBLite	consensus disorder prediction	213	240	-	-
	Trre1g02115	528	SUPERFAMILY	Leucine zipper domain	237	279	IPR046347	GO:0003700\|GO:0006355
	Trre1g02115	528	ProSiteProfiles	DOG1 domain profile.	310	524	IPR025422	GO:0006351\|GO:0043565
	Trre1g02115	528	MobiDBLite	consensus disorder prediction	128	240	-	-
	Trre1g02115	528	PANTHER	TRANSCRIPTION FACTOR TGA9	143	527	-	-
	Trre1g02115	528	MobiDBLite	consensus disorder prediction	1	25	-	-
	Trre1g02115	528	Coils	Coil	256	283	-	-
	Trre1g02115	528	FunFam	BZIP family transcription factor	236	285	-	-
	Trre1g02115	528	MobiDBLite	consensus disorder prediction	128	152	-	-
	Trre1g02115	528	Pfam	bZIP transcription factor	237	275	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g02115	Trre-Chr1	16852003	16860560	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g02115	100	528	Basic region leucine zipper (bZIP) Transcription Factor Gene Family	AT5G06839	64.560	0.0	558

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Trre1g02115		DOG1	5e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g02115	K14431		-	gmx:100815176	740.339