Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02113 ATGGCTTTAATATTGGTAGACTATATCCAACTCTTCTTCCTTTGGCTACTCTTCACCATTGCAATTCAAGCCATACTAGCTAGAAAGAAAAACAAGAACCATCTCACTCCACCAACCCCTCCATCACTACCTATCATTGGACACCTTCACCTTATTTCTAAATTACCTCATCAAAGTTTTCACAAACTCTCAACACAATATGGTCCTATAATGCAAATTTTCTTAGGTTCTAAGCTATGTGTAGTAACTTCAAGTCCAGAAATAGCAAAAGAGTTTCTTAAAGCCAATGAAACTTATTTCTCGAACCGAGTTATGAGTTCTGCAGTTGAATATTTATCATATGGCTTAAAGGGTTTCTTGTTTGCACCTTATGGTGACTATTGGAAATTCATGAAGAAGATGTGTATGTCAGAGCTTCTTGGTGGAAGAACTCTTGATCAACTTCGTCCCTTGAGGCGACAAGAGACTTTGAGGTTTCTTAGAGTTTTACAGAAGAAAGGGGAAGCTCGCGAGGTCGTTGATGTCGGTGATGAGCTTTTGACTCTTACTAATAACATCATAACAAGGATGATAATGAGAAAAACATGTTATGAGAATGATAGTGATGTTGAAGATATAAGGAAGATGGTGAAAGATACTGCAGAACTTGCAGGGAAGTTTAATGTGTCTGATTTTATTTGGTTTTGTAAAAATTTGGATTTTCAAGGAATGAATAAAAGGCTTAAAGGGATTAAGGACAGGTTTGATACAATGATGGAGAGAGTGATAAAGGAACATCAAGAGGAAAAGAAGAAAAGGAAGGAAAAGGGTGAAGGTGTTGTTCATGTTAGGGATCTACTTGATATTTTGTTGGAAATACTTGAAGATGAGAGCAATGAAATCAAATTGAGTAGAGAGAATGTTAAGGCTTTCATCTTGGATATATTTATGGCAGGAACAGACACATCTGCTATAACAATCGAATGGGCTTTGGCTGAGTTAATAAACAATCCAGATGTAATGGACAAAGCAAGACAAGAGATTGATTCAGTAATGTTAGATATGAATAGATTAATAGAAGAATCAGATATTCCCAATCTTCCATACTTGCAAGCAATTGTCAAAGAAACACTAAGAATTCACCCTACAGCACCAATTTTAGGTAGACAATCATCTGAAAGTTGTCTTGTTTATGGTTATGAGATTCCACCAAACACAAATTTGTTTGTTAATTTATGGTCTATGGGTAGGGACCCTAATCTTTGGGAAAACCCACTTGAGTTTAGGCCAGAGAGGTTTATGAATGAAGATAATAAGTTTGATATAAGGGGGCAAAATTTTCAATTTATGCCATTTGGAACTGGAAGAAGGGCTTGTCCTGGTGCCTCATTAGCACTTCATGTTGTTCCCACAAATCTTGCTAATATGATTCAATGTTTTGACTGGAAGGTTGATGGTGATGGAGTAGTTAGCATGGAAGAGAAAGCAGCTATGACCCTTCCAAGGGCTCATCCTTTGATGTGTGTTCCTATACCCCGTTTTAATCCTTCTAGTATATATTGA 1542 0.3671 MALILVDYIQLFFLWLLFTIAIQAILARKKNKNHLTPPTPPSLPIIGHLHLISKLPHQSFHKLSTQYGPIMQIFLGSKLCVVTSSPEIAKEFLKANETYFSNRVMSSAVEYLSYGLKGFLFAPYGDYWKFMKKMCMSELLGGRTLDQLRPLRRQETLRFLRVLQKKGEAREVVDVGDELLTLTNNIITRMIMRKTCYENDSDVEDIRKMVKDTAELAGKFNVSDFIWFCKNLDFQGMNKRLKGIKDRFDTMMERVIKEHQEEKKKRKEKGEGVVHVRDLLDILLEILEDESNEIKLSRENVKAFILDIFMAGTDTSAITIEWALAELINNPDVMDKARQEIDSVMLDMNRLIEESDIPNLPYLQAIVKETLRIHPTAPILGRQSSESCLVYGYEIPPNTNLFVNLWSMGRDPNLWENPLEFRPERFMNEDNKFDIRGQNFQFMPFGTGRRACPGASLALHVVPTNLANMIQCFDWKVDGDGVVSMEEKAAMTLPRAHPLMCVPIPRFNPSSIY 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02113 513 CDD CYP93 68 503 - -
Trre1g02113 513 Gene3D Cytochrome P450 22 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 Pfam Cytochrome P450 37 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 Coils Coil 334 354 - -
Trre1g02113 513 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 12 500 - -
Trre1g02113 513 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 FunFam Cytochrome P450 family protein 28 501 - -
Trre1g02113 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Trre1g02113 513 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02113 513 SUPERFAMILY Cytochrome P450 37 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02113 Trre-Chr1 16825070 16828081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02113 11 506 Cytochrome P450 AT5G06900 49.200 5.73e-171 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02113 K24188 - gmx:100805931 702.205