Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02110 ATGGCTTTAATATTGGTAGACTATATCCAACTCTTCTTCCTTTGGCTACTCTTCACCATTGCAATTCAAGCCATACTAGCTAGAAAGAAAAACAAGAACCATCTCACTCCACCAACCCCTCCATCACTACCTATCATTGGACACCTTCACCTTATTTCTAAATTACCTCATCAAAGTTTTCACAAACTCTCAACACAATATGGTCCTATAATGCAAATTTTCTTAGGTTCTAAGCTATGTGTAGTAACTTCAAGTCCAGAAATAGCAAAAGAGTTTCTTAAAGCCAATGAAACTTATTTCTCGAACCGAGTTATGAGTTCTGCAGTTGAATATTTATCATATGGCTTAAAGGGTTTCTTGTTTGCACCTTATGGTGACTATTGGAAATTCATGAAGAAGATGTGTATGTCAGAGCTTCTTGGTGGAAGAACTCTTGATCAACTTCGTCCCTTGAGGCGACAAGAGACTTTGAGGTTTCTTAGAGTTTTACAGAAGAAAGGGGAAGCTCGCGAGGTCGTTGATGTCGGTGATGAGCTTTTGACTCTTACTAATAACATCATAACAAGGATGATAATGAGAAAAACATGTTATGAGAATGATAGTGATGTTGAAGATATAAGGAAGATGGTGAAAGATACTGCAGAACTTGCAGGGAAGTTTAATGTGTCTGATTTTATTTGGTTTTGTAAAAATTTGGATTTTCAAGGAATGAATAAAAGGCTTAAAGGGATTAAGGACAGGTTTGATACAATGATGGAGAGAGTGATAAAGGAACATCAAGAGGAAAAGAAGAAAAGGAAGGAAAAGGGTGAAGGTGTTGTTCATGTTAGGGATCTACTTGATATTTTGTTGGAAATACTTGAAGATGAGAGCAATGAAATCAAATTGAGTAGAGAGAATGTTAAGGCTTTCATCTTGGATATATTTATGGCAGGAACAGACACATCTGCTATAACAATCGAATGGGCTTTGGCTGAGTTAATAAACAATCCAGATGTAATGGACAAAGCAAGACAAGAGATTGATTCAGTAATGTTAGATATGAATAGATTAATAGAAGAATCAGATATTCCCAATCTTCCATACTTGCAAGCAATTGTCAAAGAAACACTAAGAATTCACCCTACAGCACCAATTTTAGGTAGACAATCATCTGAAAGTTGTCTTGTTTATGGTTATGAGATTCCACCAAACACAAATTTGTTTGTTAATTTATGGTCTATGGGTAGGGACCCTAATCTTTGGGAAAACCCACTTGAGTTTAGGCCAGAGAGGTTTATGAATGAAGATAATAAGTTTGATATAAGGGGGCAAAATTTTCAATTTATGCCATTTGGAACTGGAAGAAGGGCTTGTCCTGGTGCCTCATTAGCACTTCATGTTGTTCCCACAAATCTTGCTAATATGATTCAATGTTTTGACTGGAAGGTTGATGGTGATGGAGTAGTTAGCATGGAAGAGAAAGCAGCTATGACCCTTCCAACTCCAAGGGCTCATCCTTTGATGTGTGTTCCTATACCCCGTTTTAATCCTTCTAGTATATATTGA 1548 0.3676 MALILVDYIQLFFLWLLFTIAIQAILARKKNKNHLTPPTPPSLPIIGHLHLISKLPHQSFHKLSTQYGPIMQIFLGSKLCVVTSSPEIAKEFLKANETYFSNRVMSSAVEYLSYGLKGFLFAPYGDYWKFMKKMCMSELLGGRTLDQLRPLRRQETLRFLRVLQKKGEAREVVDVGDELLTLTNNIITRMIMRKTCYENDSDVEDIRKMVKDTAELAGKFNVSDFIWFCKNLDFQGMNKRLKGIKDRFDTMMERVIKEHQEEKKKRKEKGEGVVHVRDLLDILLEILEDESNEIKLSRENVKAFILDIFMAGTDTSAITIEWALAELINNPDVMDKARQEIDSVMLDMNRLIEESDIPNLPYLQAIVKETLRIHPTAPILGRQSSESCLVYGYEIPPNTNLFVNLWSMGRDPNLWENPLEFRPERFMNEDNKFDIRGQNFQFMPFGTGRRACPGASLALHVVPTNLANMIQCFDWKVDGDGVVSMEEKAAMTLPTPRAHPLMCVPIPRFNPSSIY 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02110 515 FunFam Cytochrome P450 family protein 28 503 - -
Trre1g02110 515 Coils Coil 334 354 - -
Trre1g02110 515 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 12 496 - -
Trre1g02110 515 Pfam Cytochrome P450 37 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 SUPERFAMILY Cytochrome P450 37 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g02110 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Trre1g02110 515 CDD CYP93 68 505 - -
Trre1g02110 515 Gene3D Cytochrome P450 22 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02110 Trre-Chr1 16801362 16804379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02110 11 508 Cytochrome P450 AT5G06900 49.004 5.64e-169 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02110 K24188 - gmx:100805931 697.197