Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02104 ATGGATTCTAATACCCATCAAAGTTATCAACTTAAACAACAGAACCAACCCAATTCTGGGTTACTTCGTTTTCGTTCTGCACCAAGTTCACTTTTTTCAAACCTCACACCTTCTTCTTCTTCTGTTGTTGATGATAATAATAATAATAATAATAATAATAAAGGTAGTAAACATTTTTGGGATGTTTCTGAATCAGAGAGATTGGTTTCAAGATTTGTGAATAACGATAATATTTCTGGTGCATCTTGTTCTAAGGAAATGAATTCTGGTTATGGTGGTGGTGGATTGCCACCTCATTATCCTAGACATGGTTCTGCAGCTTCTACTTCAAGTTCTGCTATGGATGGTTCTTTTGGGTTGGTTGGTTCATTGGGAATGGATCATGAAACAACATCACATAAGAGTTTTGGTTTAAATCTTCTTAGACAGGCTAGTTCTCCTGCTGGTCTTTTCTCCAACATTTCCTTTGACAATGGGTTTACCACCATGAAAGGTGTTGGAAACTATGCCGCGGTGAATGGCAATAACGGAGAACTTAGTCCGTCTATTAACCGATTGAACAGTCAAGTTAGCTTCCCTTCAAGAAATGGTTCTTCATTGGGAATGTTGTCGCAAATCTCTGAAATAGATAGTGAGGATATTGAAGCAACTAGCCCTGATGATGGTTCTGGATTTCCCTATAGTTCTTGGAATGATACTCAATCGTTCTCAGAAAATCTTATTGGTTTGAAACGAGGGCGAAGCGGTAACGAAAAAATGTTTTCGGATTTTCAGAGTGGAGGACTAGGAAATCAAGTTCATACATTATCACATCACTTAAGTTTACTAAAGACTTCATCTGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCCAGATTCTGTTCCGTGTAAAATCAGAGCCAAACGAGGTTGCGCTACTCATCCTCGAAGCATTGCCGAAAGAGTAAGAAGAACTAAGATTAGTGAAAGAATGAGGAAATTACAAGAGCTTGTGCCAAACATGGACAAGCAAACTAACACATCAGACATGTTGGATTTAGCTGTTGATTACATTAAAAATCTTCAAAAGCAATTCAAGTCTCTAAGTGATAAAAGAGCAAACTGCAAATGTATGAGGATACAGAAGTCAGAAACAAATCAAATTCCTTGA 1152 0.3741 MDSNTHQSYQLKQQNQPNSGLLRFRSAPSSLFSNLTPSSSSVVDDNNNNNNNNKGSKHFWDVSESERLVSRFVNNDNISGASCSKEMNSGYGGGGLPPHYPRHGSAASTSSSAMDGSFGLVGSLGMDHETTSHKSFGLNLLRQASSPAGLFSNISFDNGFTTMKGVGNYAAVNGNNGELSPSINRLNSQVSFPSRNGSSLGMLSQISEIDSEDIEATSPDDGSGFPYSSWNDTQSFSENLIGLKRGRSGNEKMFSDFQSGGLGNQVHTLSHHLSLLKTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSDKRANCKCMRIQKSETNQIP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02104 383 MobiDBLite consensus disorder prediction 1 58 - -
Trre1g02104 383 Gene3D - 306 380 IPR036638 GO:0046983
Trre1g02104 383 Pfam Helix-loop-helix DNA-binding domain 310 356 IPR011598 GO:0046983
Trre1g02104 383 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 375 - -
Trre1g02104 383 MobiDBLite consensus disorder prediction 1 59 - -
Trre1g02104 383 FunFam Transcription factor bHLH130 family 306 375 - -
Trre1g02104 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Trre1g02104 383 Coils Coil 352 372 - -
Trre1g02104 383 SMART finulus 311 361 IPR011598 GO:0046983
Trre1g02104 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 370 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02104 Trre-Chr1 16779881 16783027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02104 1 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.938 1.87e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g02104 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02104 - - gmx:100819605 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02104 1 16779881 16783027 Trre1g02104 1 16779881 16783027 ECH
Trre1g02104 1 16779881 16783027 Trre1g06427 1 67229868 67231994 ECH
Trre13g03529 13 43090271 43092438 Trre1g02104 1 16779881 16783027 PCT