Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02102 ATGCCACCGCCTCACATTTTCAAAATGTTTTTTACTACTTTTCTCTTTCTATGTCTCTTTTTTCCTTTCACTTCATCTCTTAACTCAGATGGTCTCTCCTTACTAGCACTCAAATTAGCAATAGACATGGACCCCACCAGTATTCTCAACTCGTGGTCTGACTCAGTTTCCACACCTTGTAGTAACTTTGAAGGAGTAACATGCAACAAACTTGACCGAGTTACTCAACTCACTCTCCCTTCAAAATCCCTAACAGGTTACATACCTTCCGAGTTAGGCCATCTTACTCAACTCACTACACTTGATCTCTCAAACAACAATTTCACCAAAACCATTCCTAACTCACTCTTCAACACTACTAACAATCTCATCATCTTAGACCTTTCTCATAATTCTCTCTCTGGTCCTCTTCCACCTTCATTTACTTCACTCAAATCGTTGATCCATTGTGATTTATCTTCTAATTTTCTCAATGGTTCTTTACCTGAGTCGTTAACTGAATTAACTGCTTTAACTGGTACTTTGAATCTTTCTTTTAATGGTTTTTCTGGTGAGATACCGGCTTCTTTAGGTAATCTTCCGGTTGAAGTTAGTTTGGATCTTCGTGATAATAATCTTACTGGTGAAATTCCTCAGGTGGGGTCCTTGCTTAATCAAGGACCTACTGCTTTTTCCGGGAATCCCGGACTTTGCGGGTTTCCGTTGCGGAACCTTTGTTCGAGTCCAGACCGGACAAAGGTTCCTGATATTTACCCCGAAAACCCTGATCCGAACCCGAATGCGGTTCGGACCGGGGCGATTCGGGATAATGAGAGGGAGAGGGGTGGGTTGTTTATTGTTGTTGGTTTGGTTTTGATTTGTGTTGGGACTGTGGTGGTTTTGATGTCGGTGGTGGTGTTTCGACGGCGACGGAGGAGGTTGAATGATGGGGAAAGGGGATTTGAGAAGGGGAAGGTGGAAGGTGGTGAGGTTTTGGGTTGTGGGGAGGAGGAAAAGGGTAGATTTGTGGTGGTGGATGAAGGGTTTGGGTTTGAATTGGAAGATTTGTTAAGGGCTTCTGCTTATGTAGTTGGGAAGAGTAGGAGTGGGATTGTTTATAAGGTTGTTGGTGGCGGAAAAGGGTCGGTTCCGGCAACGACTGCGGTGGCTGTTCGGCGGTTAAGTGAGGGTGATGATGGAGGTTTAAGGTTCAAGGATTTTGAGTATGAGGTGGAAGCTATTGGAAGGGTGAGACATCCTAATGTTGTGCCTTTGAGAGCTTATTACTATGCTAGTGATGAGAAACTTCTTATCACTGATTTCATTCGCAATGGAAGCTTGCATACTGCTTTGCATGGTGGGCCATCCGATTCGTTGCCACCATTATCATGGGGGGCAAGATTAAAAATTGCTCAAGGATCTGCAAGGGGATTGATGTACATACACGAGTTTAGTGGTCGGAAATATGTCCACGGCAACATAAAATCAACGAAAATACTATTGGATGATGATCTCCATCCTTACATATCCGGCTTCGGTCTTACCCGTCTTTGTTTAGGTACTTTAAAATCGAACACCACATTCACACATAAGAGGCAGAATTCAAACCAGTCTATTTTAGCCTCAGCAATGAGTTCAAAATTCGCTGCTTCCTCTAAGAACTATATGGCACCGGAGGTGCGCATGGTTGGTGGAAAGCTCACTCAGAAATGTGATGTGTATTCTTTTGGTATAGTGTTGTTAGAACTTTTGACAGGCCGGTTGCCGGATTTAGGACCAGAAAATGATCAGAAGGAGCTAGAGAGTTTTGTGAGGAAAGCGTTCAAGGAGGAACAACCATTGTCAGAGATTATAGATCCAACACTTCTTCCCGAGGTTAATGCTAAAAAACAAGTCGTTGCAGCATTTCATGTTGCACTGAATTGTACAGAGCTTGATCCAGAATTGCGACCGAGAATGAGAACCATTTTTGAGAGCCTTGATCACATCAAAATTCAGTGA 1980 0.4328 MPPPHIFKMFFTTFLFLCLFFPFTSSLNSDGLSLLALKLAIDMDPTSILNSWSDSVSTPCSNFEGVTCNKLDRVTQLTLPSKSLTGYIPSELGHLTQLTTLDLSNNNFTKTIPNSLFNTTNNLIILDLSHNSLSGPLPPSFTSLKSLIHCDLSSNFLNGSLPESLTELTALTGTLNLSFNGFSGEIPASLGNLPVEVSLDLRDNNLTGEIPQVGSLLNQGPTAFSGNPGLCGFPLRNLCSSPDRTKVPDIYPENPDPNPNAVRTGAIRDNERERGGLFIVVGLVLICVGTVVVLMSVVVFRRRRRRLNDGERGFEKGKVEGGEVLGCGEEEKGRFVVVDEGFGFELEDLLRASAYVVGKSRSGIVYKVVGGGKGSVPATTAVAVRRLSEGDDGGLRFKDFEYEVEAIGRVRHPNVVPLRAYYYASDEKLLITDFIRNGSLHTALHGGPSDSLPPLSWGARLKIAQGSARGLMYIHEFSGRKYVHGNIKSTKILLDDDLHPYISGFGLTRLCLGTLKSNTTFTHKRQNSNQSILASAMSSKFAASSKNYMAPEVRMVGGKLTQKCDVYSFGIVLLELLTGRLPDLGPENDQKELESFVRKAFKEEQPLSEIIDPTLLPEVNAKKQVVAAFHVALNCTELDPELRPRMRTIFESLDHIKIQ 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02102 659 ProSiteProfiles Leucine-rich repeat profile. 97 119 IPR001611 GO:0005515
Trre1g02102 659 Gene3D Phosphorylase Kinase; domain 1 330 434 - -
Trre1g02102 659 Pfam Protein tyrosine and serine/threonine kinase 358 653 IPR001245 GO:0004672|GO:0006468
Trre1g02102 659 FunFam Leucine-rich repeat receptor-like kinase 32 143 - -
Trre1g02102 659 Gene3D Ribonuclease Inhibitor 174 230 IPR032675 -
Trre1g02102 659 Gene3D Transferase(Phosphotransferase) domain 1 435 659 - -
Trre1g02102 659 SUPERFAMILY Protein kinase-like (PK-like) 356 653 IPR011009 -
Trre1g02102 659 Gene3D Ribonuclease Inhibitor 27 173 IPR032675 -
Trre1g02102 659 ProSiteProfiles Protein kinase domain profile. 351 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02102 659 FunFam Leucine-rich repeat receptor-like protein kinase 146 241 - -
Trre1g02102 659 Pfam Leucine rich repeat N-terminal domain 28 69 IPR013210 -
Trre1g02102 659 SUPERFAMILY L domain-like 34 237 - -
Trre1g02102 659 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 657 IPR046959 -
Trre1g02102 659 Pfam Leucine rich repeat 97 155 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02102 Trre-Chr1 16767990 16772095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02102 27 657 Receptor kinase-like Gene Family AT3G57830 57.716 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre1g02102 PK_Tyr_Ser-Thr 4.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02102 - - tpra:123899429 1129.01