Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02099 ATGGCTCCGGCGTCGGAAACCGCGAACTCTTTCACCGCACTACTCGAACTACCTCCGACGCAGGTTGTTGAGCTTCTTCACTCATCGGAGATTACTGGAAAACCTCCGAAACCCTATCCCTTGACTTGCGACACCGGTAATTTGACCTTCCCTAACACCACCGCAAGATTCTCTATGTTCGCCGGAGAGAACAAGAACTCAGCGAACGTTAATTCACTGCATCATGAGGTGAAGGATGAGTTACCGGAGACTGAAGGAGGTGGCTGTGTCTCTGATCCAACAATCGAGAACAAGAAATCCAAAGGTGCGAAGAGGAAAGAGCGAGAGAAGAAGGTTAAAGTGTCGTCTAAGAAAAACAAAAGTATCGCCGACGAGAATTCCGGCAACGGCGGCGATGAGCTTCCGTATGTTCACGTTCGAGTTCGTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCACGAATGAAACTGTTGCAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACAGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTGGAGATTTTATCAATGAAACTAGCAGCAGTTAACCCAATAATTGATTCCAACCTTGATAGCATATTGGCTACAGAAGGTTTGTCTCTCATGGACAGTAACTTCCCTGCTACAGTTGCACCCGTCTTGTGGCAGGAAATCCCTCACAATGGAAACAGACAGCAATTTCAGCAACCGTGGCAATCCAATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAAACAACACTAATTTCATGACCCCAGAAAACTCACTTTTGAGTTACGACTCATCAGCAAATTCAGTTTCTCTGCACTCAAATCAGATGAAGATGGAGCAATGA 918 0.463 MAPASETANSFTALLELPPTQVVELLHSSEITGKPPKPYPLTCDTGNLTFPNTTARFSMFAGENKNSANVNSLHHEVKDELPETEGGGCVSDPTIENKKSKGAKRKEREKKVKVSSKKNKSIADENSGNGGDELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPIIDSNLDSILATEGLSLMDSNFPATVAPVLWQEIPHNGNRQQFQQPWQSNAFHQPLWGREENNTNFMTPENSLLSYDSSANSVSLHSNQMKMEQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02099 305 CDD bHLH_AtBPE_like 135 220 - -
Trre1g02099 305 SMART finulus 151 201 IPR011598 GO:0046983
Trre1g02099 305 MobiDBLite consensus disorder prediction 77 134 - -
Trre1g02099 305 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Trre1g02099 305 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 85 289 IPR024097 GO:0006355
Trre1g02099 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
Trre1g02099 305 FunFam transcription factor bHLH48-like isoform X1 142 214 - -
Trre1g02099 305 Gene3D - 142 215 IPR036638 GO:0046983
Trre1g02099 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02099 Trre-Chr1 16735797 16741775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02099 3 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 48.857 2.80e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g02099 HLH 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02099 - - psat:127091567 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02099 1 16735797 16741775 Trre1g02099 1 16735797 16741775 ECH
Trre13g03527 13 43035345 43052443 Trre1g02099 1 16735797 16741775 PCT