Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02098 ATGGAGCAAACCACACTCGAATCGATTCAATTCAACGAAGAAATTCAAGGAATCATGGCTCCGGCGTCGGAAACCGCGAACTCTTTCACCGCACTACTCGAACTACCTCCGACGCAGGTTGTTGAGCTTCTTCACTCATCGGAGATTACTGGAAAACCTCCGAAACCCTATCCCTTGACTTGCGACACCGGTAATTTGACCTTCCCTAACACCACCGCAAGATTCTCTATGTTCGCCGGAGAGAACAAGAACTCAGCGAACGTTAATTCACTGCATCATGAGGTGAAGGATGAGTTACCGGAGACTGAAGGAGGTGGCTGTGTCTCTGATCCAACAATCGAGAACAAGAAATCCAAAGGTGCGAAGAGGAAAGAGCGAGAGAAGAAGGTTAAAGTGTCGTCTAAGAAAAACAAAAGTATCGCCGACGAGAATTCCGGCAACGGCGGCGATGAGCTTCCGTATGTTCACGTTCGAGTTCGTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCACGAATGAAACTGTTGCAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACAGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTGGAGATTTTATCAATGAAACTAGCAGCAGTTAACCCAATAATTGATTCCAACCTTGATAGCATATTGGCTACAGAAGGTTTGTCTCTCATGGACAGTAACTTCCCTGCTACAGTTGCACCCGTCTTGTGGCAGGAAATCCCTCACAATGGAAACAGACAGCAATTTCAGCAACCGTGGCAATCCAATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAAACAACACTAATTTCATGACCCCAGAAAACTCACTTTTGAGTTACGACTCATCAGCAAATTCAGTTTCTCTGCACTCAAATCAGATGAAGATGGAGCAATGA 972 0.4588 MEQTTLESIQFNEEIQGIMAPASETANSFTALLELPPTQVVELLHSSEITGKPPKPYPLTCDTGNLTFPNTTARFSMFAGENKNSANVNSLHHEVKDELPETEGGGCVSDPTIENKKSKGAKRKEREKKVKVSSKKNKSIADENSGNGGDELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPIIDSNLDSILATEGLSLMDSNFPATVAPVLWQEIPHNGNRQQFQQPWQSNAFHQPLWGREENNTNFMTPENSLLSYDSSANSVSLHSNQMKMEQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02098 323 SMART finulus 169 219 IPR011598 GO:0046983
Trre1g02098 323 MobiDBLite consensus disorder prediction 95 152 - -
Trre1g02098 323 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 103 307 IPR024097 GO:0006355
Trre1g02098 323 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Trre1g02098 323 Gene3D - 160 233 IPR036638 GO:0046983
Trre1g02098 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 230 IPR036638 GO:0046983
Trre1g02098 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Trre1g02098 323 FunFam transcription factor bHLH48-like isoform X1 160 232 - -
Trre1g02098 323 CDD bHLH_AtBPE_like 153 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02098 Trre-Chr1 16735797 16741829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02098 2 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 47.439 9.40e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g02098 HLH 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02098 - - psat:127091567 510.375