Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02094 ATGGATGGTACTGAAGATATGTCATGTAACAATGGTCAATCTGCAATCACAAGCAGTGTTCCATTAGATCAGTCGCATGAGGTCCATTTTCAAAATGATGAAATGATAAACATAGCTCAAGATCACACCTATTCAATGTTGAGTTTTGTTGATGGAAGTGAATTATATAAATTTGCTCAATTGATGGAAATTGATCCCAATTGGAAAAGGATTCGTTCCGTAAAAAAGGAGAATGAATGGATAAAACCAACTTGGGCAAAAAGATCTCGTAAGACAACTGTGAAGGATATAGATCTAAATAGCTCTAAATATCAGGGTGTTACGAAGAACAGTGATAATCATTATGAAGCATTTCTTTGGGAGTACTACACTAGAAATAGTGGGAGAGGCAAGAGAGGAAGATTTCAAACTGAAGTTCAAGCAGCCATAGCTCACGATTTAATCGCTATTAAGACGTGGGGCGAATCTACACTTACAAATTTTCCGGTGAGTGGTTACTCAAAGCAAATCTCACAAATGAAAAGTATGAACATAGATCAGTTGATTTTTAATATTACAAAGACCCCAAAGAAGAATGGTATTGAATACGTGCGTGTCACAAGAATTGATGGAGATAAATGGGAAGTGAGATTGGAAAATGTAAATGGGAGGCCAACCTATTACTTGGGATTATTTGACACTAAGGAGGAAGCTACTAGGGCATATGATGCAGCAACAAAGAAAGTGAAAGAAGAGGACATGTCCACAAATATTGATCCTAATAATTATCGTAATGTTACGCGACCCGTGCAAATGCGCAGACCTTTTACCGGTAGTAGTGGAAGTGTAAGAGGCCTGCAAAGTTTAAATCAACATGTTGATCTTGATATATTTCAAGAATATCAATATCGTCATCATTTTTTACGTCGACATGATGACTTGAACTCATCAGCTCCAATCATACTTTATGATTTTAGTAATCATTCAGTTTATGAAGCTGGAAAAGATGGATATGGGAGCCATGCATATTATCATTCTACCATGGAACATTCAAATTTTGTTGGATCAAGCAATAATATTGGAAACTCTTCAAACCAAGGAGTAGTAGATAATGGTACTTCATTCAGTGCTGGTTATGATCAAACAAACAAAGATTTTGACATGGGAAATTTGGAGGATCAGAAGATTAATGATTGA 1176 0.3605 MDGTEDMSCNNGQSAITSSVPLDQSHEVHFQNDEMINIAQDHTYSMLSFVDGSELYKFAQLMEIDPNWKRIRSVKKENEWIKPTWAKRSRKTTVKDIDLNSSKYQGVTKNSDNHYEAFLWEYYTRNSGRGKRGRFQTEVQAAIAHDLIAIKTWGESTLTNFPVSGYSKQISQMKSMNIDQLIFNITKTPKKNGIEYVRVTRIDGDKWEVRLENVNGRPTYYLGLFDTKEEATRAYDAATKKVKEEDMSTNIDPNNYRNVTRPVQMRRPFTGSSGSVRGLQSLNQHVDLDIFQEYQYRHHFLRRHDDLNSSAPIILYDFSNHSVYEAGKDGYGSHAYYHSTMEHSNFVGSSNNIGNSSNQGVVDNGTSFSAGYDQTNKDFDMGNLEDQKIND 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02094 391 SMART rav1_2 103 168 IPR001471 GO:0003700|GO:0006355
Trre1g02094 391 SMART rav1_2 195 258 IPR001471 GO:0003700|GO:0006355
Trre1g02094 391 MobiDBLite consensus disorder prediction 1 21 - -
Trre1g02094 391 SUPERFAMILY DNA-binding domain 102 164 IPR016177 GO:0003677
Trre1g02094 391 SUPERFAMILY DNA-binding domain 199 252 IPR016177 GO:0003677
Trre1g02094 391 Gene3D AP2/ERF domain 195 252 IPR036955 GO:0003700|GO:0006355
Trre1g02094 391 Gene3D AP2/ERF domain 102 164 IPR036955 GO:0003700|GO:0006355
Trre1g02094 391 ProSiteProfiles AP2/ERF domain profile. 103 162 IPR001471 GO:0003700|GO:0006355
Trre1g02094 391 ProSiteProfiles AP2/ERF domain profile. 190 252 IPR001471 GO:0003700|GO:0006355
Trre1g02094 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 90 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02094 Trre-Chr1 16696265 16700751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02094 29 256 AP2-EREBP Transcription Factor Family AT1G72570 29.555 2.73e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02094 K09285 - psat:127091562 186.422