Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02091 ATGGGTAAGACGAAGAAGAAGAGAAGTAGGGTTTCCGTTTCCTCCGATGACGATGAAGAAATCGGATCTGATAATATCAATAACGCTTCCGATCAAAACCAGAACTCCCTCTACCAGGTTCTTGGTGTAGACAAAACAGCATCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCGTCGAGACTTCATCCTGATAAGAATCCTGGTGATGAGGAAGCTAAAGCCAAGTTTCAACAATTGCAAAGTGTTATCTCAATTCTTGGAGATGAACAAAAACGGGCAGTGTATGATCAGACTGGTTCTGTTGATTGTGCTGACCTTGGAGGAGATGTTGTTCATAATCTTCATGAATATTTCAGAACAATGTACAAGAAGGTTACTGAAGCTGATATTGAGGATTTTGAAGCAAACTATAGGGGATCTGACTCTGAGAAAAATGATTTGATTAATCTTTACAAGGAATGCAAGGGTAATATGAAGAGGTTATTTTGTTCAATGCTTTGTTCGGATGCTAAACTCGACTCTCACCGGTTCAAGGATATTATTGATGAGGCTATAGCTTCGGGAGAACTAAAGGAAAAGAAAGCCTACAAGAAATGGGCTAAGAAAATTTCCGAAACCAAGCCACCAACTAGTCCTTTAAGGAGGGCAAAAGCAAATAAGGAACCAAAAACGGATTTGTATGCTATCATATCAAAACGACGAGATGAGAGGAAAGATCGGTTTGATTCTATGTTCTCATCTCTAATTTCAAAATATGGTGGAGGCCACGTGCCAGAACCCTCTGAAGAGGAATTTGAAGCGACACAGAAAAAGATGGAAAGCCGAAGATCCTCAAAAAAGCCAAGGCGAAAGTAA 861 0.3984 MGKTKKKRSRVSVSSDDDEEIGSDNINNASDQNQNSLYQVLGVDKTASQQEIKKAYHKLASRLHPDKNPGDEEAKAKFQQLQSVISILGDEQKRAVYDQTGSVDCADLGGDVVHNLHEYFRTMYKKVTEADIEDFEANYRGSDSEKNDLINLYKECKGNMKRLFCSMLCSDAKLDSHRFKDIIDEAIASGELKEKKAYKKWAKKISETKPPTSPLRRAKANKEPKTDLYAIISKRRDERKDRFDSMFSSLISKYGGGHVPEPSEEEFEATQKKMESRRSSKKPRRK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02091 286 PRINTS DnaJ domain signature 93 112 IPR001623 -
Trre1g02091 286 PRINTS DnaJ domain signature 73 93 IPR001623 -
Trre1g02091 286 PRINTS DnaJ domain signature 38 56 IPR001623 -
Trre1g02091 286 PRINTS DnaJ domain signature 56 71 IPR001623 -
Trre1g02091 286 SUPERFAMILY Chaperone J-domain 35 120 IPR036869 -
Trre1g02091 286 MobiDBLite consensus disorder prediction 253 286 - -
Trre1g02091 286 MobiDBLite consensus disorder prediction 259 276 - -
Trre1g02091 286 SMART dnaj_3 35 93 IPR001623 -
Trre1g02091 286 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 27 286 IPR042977 -
Trre1g02091 286 MobiDBLite consensus disorder prediction 1 34 - -
Trre1g02091 286 Pfam DnaJ domain 37 98 IPR001623 -
Trre1g02091 286 ProSiteProfiles dnaJ domain profile. 36 101 IPR001623 -
Trre1g02091 286 CDD DnaJ 38 90 IPR001623 -
Trre1g02091 286 Gene3D DnaJ domain 20 108 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02091 Trre-Chr1 16679409 16683170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02091 38 98 C2H2 Transcription Factor Family AT1G74250 40.909 2.33e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02091 K09529 - gmx:100781463 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02091 1 16679409 16683170 Trre1g02091 1 16679409 16683170 ECH
Trre13g03502 13 42691851 42694100 Trre1g02091 1 16679409 16683170 PCT