Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02090 ATGGATGATTATGAGATTGTTGAGAAACTTGGAAGAGGAGCTTTAGGTGCAACTTTTCTTGTTCTTCATAAGACCGACAGAAAGAGGTATGTGTTGAAGAAAATTCGTTTGGCCAAGCATACAGAGAAGTCCAAATTGACAGCATACCAAGAGATGGACCTGATAGCACAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACTATATATACATTATAAGCGGCTATTGCGAAGGAGGTGACATGGCTGAGAATATAAAGAAATCTCGAGGATCTTTTTTTCCAGAGGAGAAAGTCTGCAAATGGATGACTCAATTGTTGCTAGCTGTCGACTACCTGCACTCTAACCGTGTGCTCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGAAAACAACATTCGTCTAGGTGACTTTGGTCTTGCAAAGCTACTTAATGCAGATGATCTTGCTTCTTCGGCTGTTGGAGCACTAAATTACATGTGTCCCGAGATCTTTGCAGATATGCCATATGGTTATAAATCTGACATATGGTCGCTTGGTTGCTGTATGTTTGAAATTGTTGCACATCAGCCGGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATCCACCATTTCTCCAATGCCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCTGAACACAGACCAACAGCAGCTGAATTGTTGAGACATCCTCATTTACAGCCTTTTGTTCTCCGCTCTCGTAATGCACCATCGGTTTTTCTTCCGGTACATCTCATAAGTTGTGACTCACCGAAAAAATCTTACAAATCTACTGGTGGCAATGACAATAGGGACAAAGAAGAAGGATTAGTAAACCATTTGGAGCGTGTTTATCCGTTTGAGGTAAATGGAGATGTACAGACAAGAAACCGACCAAATGGTCGAAAACTAGCAGTGTCAAAAAGCACAGAAGACAACCTTGAGACTAAAATGGTTGATCCTACCAGCTATACATTGGAATTCTCTACTAGTATCAGCGGCTCAAAAGATGAGTCAACAACATCTGAATCAACCGTTTGTAGCATGTGCAAGGAAGTAGACTTCAAAAGTAGAGCTGCAAGAGGTATGGCTGAAAGTGAGATCACTTCAAAGAGTACCCTAGATTCTGCGCATGAAAAGCAAGTATTTGCTACTGAAAATTTTCAGAAGTCGTATGCAGTTGACATAAATGCCGCGACTAAAAAAATTGAATATACTTTCTCCAATGAAGAAAGCAGTGGAAATGATAAAGACGCGTCCACCAGTGATGAGGTCACATCACAATGTACTCGAGATACTCTGGATGTAGAACAAAGATTTACTGTTGAACATTTTCAGAAGGGTGATTCAACTGTCATAAATGCATTAACTAGAGAAGACAAATATAAATTTTCCAATAAAGGTTTTGATAAAGCTGAATCACAGAGAGAAAATTTGAAACCCGAGGACTTCATTAAATCGATAATGTCCAGTGAAGATAGAAATGGAATTAATATAAATGGATCCATTGATGAGGTCACTTCAGAAAGTACACTAGAGTTTTTGCTTGTAGAACAATTTATTACTGAACATTTTCAGAATCCTGATGCATTTGATATAAATGCAGTGACAGCAGAAGTTGAAGGTACTTTTTCCGAAGGTTGTTTTGATACTTTTTCCGAATGTGATTTTGATGCTTTTTCCGAAGCACCGAGAGAAGATGCTCAACTTGAAGACTCAAGTAAATCAATCATTTACAGGAAAGACTGGAATGTAAATGATAAAGAACCCAGTGATGATATCACTTCAAAGAGCACACCTGATTCTGTACACGAAGAACGGGAATCTGCCACTGAGAATTTTGAGAACTCAAATACAATTGGCATAAATACAGTGACTACAAAGGTTGAGGATACTCTTTCCAGCGACGAGAATTTTCAGAACTCAAATACAATTGGCATAAATACTGTGACTACAAAAGTTGGGGATACTCTTTGCAGTGAAGGTTTTGATGAAGCTGTAGTAGCACAAAGAGAAGATGCCAAACCTGAGGACTCAAGTAAATCAATCATTTACAGCAAAGATTGCAACGCAGATGATAAAGAACAGTCCATCAATGGTACCACTTCAAAGAGTGCCCTGGATTCTGTGCATGAAGCACATGAATTTGCTGCTGAAAACTTTCCGAAGTCAAATACAATTGACATAAATGCAGTGACTACGAAAGTTGATGATACTCTTTCTAGTAAAGGTTTTGATAAAGCTGAAGCAGAATGTGAAGATGTCAAACCCGAGGACTTGTGTGAATCAATTATTTACAGTGAAGACAACAACGAAGAAGAGTCTATTGATGAGATCACATCAAAGAGCACACTGGATTCATCTAATGAAGAAACACATTTTGCTGCTGAACACTTTCAGAAGCCAGATACAATTGGCATAAATGCAGTGACTACAAAAGTTGATGATATTCTTTCCAGCGAAGATTGTGATAAAACCGAGGCGCAAAGAGAAGATGTTCAACCTGAGGACTCAAGTAAATCACTCATTTACGGCAATGGCAATGACAAAGAAGTGTCAATTGATGAGATCACATCAAACACCACCCTGGATACATTGCAAGAAGAACAGCAAGTTTCTGCTGAACATTCTCAGAAGCCAAATACAATTGACGTAAATGTGGTCACTGCGAATGTCAATGATATTTCTTCCAATGATGGTATCGATAAAGCCGAAGCACAGAATGGAAATTCCAACCCTGACGGCTCTTGTAAATCTATAGTGTCCAGTGAAGACAAGACGGACAATGATAAAGTTGGTTTCATTGATGAGGAAAAAGCATCACCAATTGTGCATACTGCTAGGGTTGAACAAGACACTGATACTGTAAACTGCTTGAAGGAAAGTAAAAACTCTGAAGCATTTACACCAAATGGCGATAATAATGACATTGTGGTTGGTAAGACACCAAATGAAATTTCCTTAAGCAAAAATAATTCAGTAGGTGGTGATAAAACAAAGAGGGTGTTGAATAATTCCGGCCAACAAAGAGCCGATGCTTTGGAGTCTCTACTTGAGTTATGTGCTCATTTACTTAAGCAAGGAAAGCTTGAAGAGCTTGCTGCAGTGCTAAGACCGTTCGGAGAAGACACGGTTTCATCCAGAGAAACAGCTATATGGTTGACAAAAAGCCTCATCTCATCACAAAAATTTAATCCGGAAACCTAG 3282 0.39 MDDYEIVEKLGRGALGATFLVLHKTDRKRYVLKKIRLAKHTEKSKLTAYQEMDLIAQLNYPYIVEYKDAWVEKEDYIYIISGYCEGGDMAENIKKSRGSFFPEEKVCKWMTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGDFGLAKLLNADDLASSAVGALNYMCPEIFADMPYGYKSDIWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSTISPMPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPHLQPFVLRSRNAPSVFLPVHLISCDSPKKSYKSTGGNDNRDKEEGLVNHLERVYPFEVNGDVQTRNRPNGRKLAVSKSTEDNLETKMVDPTSYTLEFSTSISGSKDESTTSESTVCSMCKEVDFKSRAARGMAESEITSKSTLDSAHEKQVFATENFQKSYAVDINAATKKIEYTFSNEESSGNDKDASTSDEVTSQCTRDTLDVEQRFTVEHFQKGDSTVINALTREDKYKFSNKGFDKAESQRENLKPEDFIKSIMSSEDRNGININGSIDEVTSESTLEFLLVEQFITEHFQNPDAFDINAVTAEVEGTFSEGCFDTFSECDFDAFSEAPREDAQLEDSSKSIIYRKDWNVNDKEPSDDITSKSTPDSVHEERESATENFENSNTIGINTVTTKVEDTLSSDENFQNSNTIGINTVTTKVGDTLCSEGFDEAVVAQREDAKPEDSSKSIIYSKDCNADDKEQSINGTTSKSALDSVHEAHEFAAENFPKSNTIDINAVTTKVDDTLSSKGFDKAEAECEDVKPEDLCESIIYSEDNNEEESIDEITSKSTLDSSNEETHFAAEHFQKPDTIGINAVTTKVDDILSSEDCDKTEAQREDVQPEDSSKSLIYGNGNDKEVSIDEITSNTTLDTLQEEQQVSAEHSQKPNTIDVNVVTANVNDISSNDGIDKAEAQNGNSNPDGSCKSIVSSEDKTDNDKVGFIDEEKASPIVHTARVEQDTDTVNCLKESKNSEAFTPNGDNNDIVVGKTPNEISLSKNNSVGGDKTKRVLNNSGQQRADALESLLELCAHLLKQGKLEELAAVLRPFGEDTVSSRETAIWLTKSLISSQKFNPET 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02090 1093 MobiDBLite consensus disorder prediction 613 637 - -
Trre1g02090 1093 SUPERFAMILY Protein kinase-like (PK-like) 1 282 IPR011009 -
Trre1g02090 1093 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Trre1g02090 1093 MobiDBLite consensus disorder prediction 921 957 - -
Trre1g02090 1093 MobiDBLite consensus disorder prediction 921 945 - -
Trre1g02090 1093 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02090 1093 FunFam serine/threonine-protein kinase Nek6 isoform X2 84 272 - -
Trre1g02090 1093 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02090 1093 MobiDBLite consensus disorder prediction 434 453 - -
Trre1g02090 1093 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 648 - -
Trre1g02090 1093 MobiDBLite consensus disorder prediction 613 643 - -
Trre1g02090 1093 Gene3D Transferase(Phosphotransferase) domain 1 84 268 - -
Trre1g02090 1093 MobiDBLite consensus disorder prediction 848 875 - -
Trre1g02090 1093 CDD STKc_Nek 3 258 - -
Trre1g02090 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trre1g02090 1093 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02090 1093 MobiDBLite consensus disorder prediction 848 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02090 Trre-Chr1 16668292 16675315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02090 4 259 MAP Kinase Kinase Kinase AT3G13530 31.518 2.61e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trre1g02090 Pkinase 2.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02090 K08857 - gmx:100818558 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02090 1 16668292 16675315 Trre1g02090 1 16668292 16675315 ECH