Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02087 ATGGCAGACCCTTATTCTAATTTTTTCTCATCAAATTTCTTTCAATTCAATAATACTAATCATAATAATTCAACACACCATTACCCTTCTTCATACCCTTCACCCCACCACCACCATCATCCTAATTATCTTCACAATTTCATCAACCACACAACTTTTAACAACACTAACACCAACAACAACACTTTTTTTCACTACCATCATCATCTTCACCACCTTCAACCTACAACAACTGCATCTTCTTCTTCTTCTTCTTCTTCTTCATATTCTTCACCTTCTTCTCCTCCTCTAAAAGAAGCCCTTCCACTTTTGAGTCTAATCCCTACAAAACAAGAAGAATTTGATGTCTTAGAACATCATCATCATCTTCATCATGATTCATCTTGCACTTTAATGGAAGTGGAGGATTGTAGGTATAATAATAAAGTAGAGAAAAAAGATGATGATGATGATGATGAAAGTGTGACTGTTGCACTTCATATAGGGTTACCAAACCCTAGTGCTGCTGAGATTGCAACTATGATGATGTCTACTTCATCTTCTGAAATGATGAATAATGAAAGAGATAATCAATTATTACAAGGCGATGTTATAAGTGAGGATTCATCTTCAGCTGGTTTGTTGAGTAGTAATAGATCACAAATCAACAAGGGTCAGTATTGGATTCCTACACCTTCACAAATTCTCATTGGTCCTACACAGTTCTCTTGTCCTGTTTGCTGCAAAACCTTCAACAGATATAATAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGCCCCGAATCTCTACGAGGTACACAACCTACGGGTATGCTAAGGCTTCCGTGTTATTGTTGTTCGCCAGGTTGTCGGAACAACATCGATCATCCAAGAGCGAAGCCGTTGAAAGATTTTAGAACACTTCAAACACATTACAAAAGAAAACATGGAATTAAGCCATTCATGTGTAGAAAATGCGGTAAAGCTTTCGCGGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGTTTATGTGGTTCTGATTTTAAACATAAGAGATCACTAAAGGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGAATCAATGGTTTTGAAGAAGAAGATGAACCTGCTTCTGAAGTTGAACAAGATAATGATTCCACTCAGACTCAGTAG 1197 0.3734 MADPYSNFFSSNFFQFNNTNHNNSTHHYPSSYPSPHHHHHPNYLHNFINHTTFNNTNTNNNTFFHYHHHLHHLQPTTTASSSSSSSSSYSSPSSPPLKEALPLLSLIPTKQEEFDVLEHHHHLHHDSSCTLMEVEDCRYNNKVEKKDDDDDDESVTVALHIGLPNPSAAEIATMMMSTSSSEMMNNERDNQLLQGDVISEDSSSAGLLSSNRSQINKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGINGFEEEDEPASEVEQDNDSTQTQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02087 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 235 262 IPR013087 -
Trre1g02087 398 MobiDBLite consensus disorder prediction 75 96 - -
Trre1g02087 398 MobiDBLite consensus disorder prediction 379 398 - -
Trre1g02087 398 SUPERFAMILY beta-beta-alpha zinc fingers 301 339 IPR036236 -
Trre1g02087 398 SMART c2h2final6 235 257 IPR013087 -
Trre1g02087 398 SMART c2h2final6 319 339 IPR013087 -
Trre1g02087 398 ProSitePatterns Zinc finger C2H2 type domain signature. 237 257 IPR013087 -
Trre1g02087 398 MobiDBLite consensus disorder prediction 75 95 - -
Trre1g02087 398 Gene3D Classic Zinc Finger 234 257 - -
Trre1g02087 398 Gene3D Classic Zinc Finger 297 373 - -
Trre1g02087 398 FunFam Zinc finger protein WIP2 288 370 - -
Trre1g02087 398 PANTHER ZINC FINGER PROTEIN WIP2 59 393 IPR043584 GO:0003700|GO:0010468
Trre1g02087 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 319 339 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02087 Trre-Chr1 16626353 16629679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02087 1 398 C2H2 Transcription Factor Family AT3G57670 57.005 2.03e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02087 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02087 - - tpra:123897861 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02087 1 16626353 16629679 Trre1g02087 1 16626353 16629679 ECH
Trre1g02087 1 16626353 16629679 Trre11g04480 11 57007638 57010420 ECH
Trre13g03500 13 42649581 42652001 Trre1g02087 1 16626353 16629679 PCT