Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02055 ATGGACTCAAATGATTTGGAGCGTGAAAGAGGAATTACTATACTGAGTAAAAATACTTCTGTGACTTATAAAGATGCCAAGATTAATATAATTGATACTTCTGGCCACTATGATTTTGGTGGTGAAGTTGAACGCATCTTGAATACGGTTGATGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCGCATACAAGATTTGTCTTAAAGAAGGCTTTAGAGTTTGGTAATGCGGTTGTTGTAATTGTCAATAAAATAGACAGTTCTTCTGCTCACCCTGAGTTTTCCGTCTATTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTTATGCTTGGGATATAACTCAATTAGTTTGTTTTCTGTGTTTTACAAATTGGGTTCATACTTGGAATTGGAATGTGACTTTCAGGTAATATATGCAAGTGGTATAAAAGGGAAAGACGGGTTGTCTCCTGAAAATCTGGGAGATGACCTTGGGCCATTGTTTGAATCCATCACGAGATGTATCCCTGAACCACGTGTTGGCAAAAATGGCTCACTCCAAACACTTGTTACAAGTACCGAATCGGAGGGAACTACACAAGTCAAATATAAGATCCCAACCCGTGGTCTACTTGGATTGCGGAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAACACTGTATTTGATTGCTATGGTCCTTGGGCCGGTGATATGATCACTCGGGATTTAGGCTCGCTGGTTGCTTTTGAGGGTGGAACTAGTACTTCTTATGCAATGTTAAATATTTGA 801 0.3958 MDSNDLERERGITILSKNTSVTYKDAKINIIDTSGHYDFGGEVERILNTVDGILLVVDSVEGPMPHTRFVLKKALEFGNAVVVIVNKIDSSSAHPEFSVYSTFELFIELNATDEQLCLGYNSISLFSVFYKLGSYLELECDFQVIYASGIKGKDGLSPENLGDDLGPLFESITRCIPEPRVGKNGSLQTLVTSTESEGTTQVKYKIPTRGLLGLRNAILTASRGTAILNTVFDCYGPWAGDMITRDLGSLVAFEGGTSTSYAMLNI 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02055 266 SUPERFAMILY EF-G C-terminal domain-like 194 265 IPR035647 -
Trre1g02055 266 Pfam Elongation factor Tu GTP binding domain 1 177 IPR000795 GO:0003924|GO:0005525
Trre1g02055 266 NCBIfam small GTP-binding protein domain 9 92 IPR005225 GO:0005525
Trre1g02055 266 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 180 IPR000795 GO:0003924|GO:0005525
Trre1g02055 266 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 152 - -
Trre1g02055 266 Gene3D - 1 179 IPR027417 -
Trre1g02055 266 Gene3D - 180 245 - -
Trre1g02055 266 Pfam Elongation factor G C-terminus 192 243 IPR000640 -
Trre1g02055 266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 185 IPR027417 -
Trre1g02055 266 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 2 17 IPR031157 -
Trre1g02055 266 PRINTS GTP-binding elongation factor signature 9 17 IPR000795 GO:0003924|GO:0005525
Trre1g02055 266 PRINTS GTP-binding elongation factor signature 45 56 IPR000795 GO:0003924|GO:0005525
Trre1g02055 266 PRINTS GTP-binding elongation factor signature 29 39 IPR000795 GO:0003924|GO:0005525
Trre1g02055 266 PRINTS GTP-binding elongation factor signature 81 90 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02055 Trre-Chr1 16354738 16356466 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02055 1 89 Eukaryotic Initiation Factors Gene Family AT3G22980 41.573 1.86e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02055 K06207 - ming:122058267 276.944