Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02050 ATGGAAAATTGCTATGCAAATCTATGCAGTGTGTTCAAGAAACACAAACGAAAGGAAAAGCCCGAGGAAGACTGGCCCGAGAAGATAAACATCAACACTGAATTGGTGGTGTTAAGAGAGCCAACGGGCCGAGAAATTGGGCTACGATACGAATTAGGGAGGGAATTAAGGAGAAGTGAATTCGGAATAACATACCTTTGCAAAGACAGAGAAACAGGAGAAGAACTTGCTTGTAAGTCAATTTCAAAGAATAAGCTTAGAACAGCAATTGCCATTGAAGATGTTAGAAGAGAAGTTGAAATCATGAGACATTTACCTAAACACCCTAACATAGTTTCCTTGAAGTATACTTATGAAGATGATGACGATGTTCATCTTCTTATGGAACACTGTGAAGGTGGTGGTAACCTTCTTGATTGCATCTTCTTTAGAGGAGGGTATAACGAATGCTCCGCAGCTTCTATCATTAAAACCATCGTCCAAGTTGTTCAGATGTGCCACGAACATGGTGTGATGCTTCGGAATCTCAAACCCAAGAACTTTTTGTGTGCAGACAAGAAAGACACAGCATATTTGAAACTTACTGACTTTCGTTCTTCAATTTTCTTTAAACCAGGTGAAAGATTGAATCAGATAGTTGGAAAACTATGTTACACGGCCCCTGAAGTATTACTGAGAAATTATGGCCCTGAAATTGATATCTGGAGTGCTGGAGTCATTCTTTATTTCTTACTTTGTGGTTTCCCTCCGTTTTGCGCAGAAACTGATCAGGAACTTGCTGAAAAAATTGCACAATCTGATATTTACTTTAAATGGAAGCCATGGCCAAATGTTTCTGATAATGCAAAAGATCTTGTTAAAAAGATGCTTGATCCTGACCCAAAACGCCGGCTTACTGCACTGGAAGTGTTAGATCATCCATGGTTGCAAAATGCTAAGACAGCTCCTAATGTTTCATTGGGAGAAGCAGTCCGAGCAAGGCTCATGCAATTTTCTGTAATGAACAAACTTAAGAAAACAGCATTGAGGGTGATAGCAGATCATTTGTCTGTAGAAGAATTTGCTGGAATAAAAGAGGGATTCAAAGTGATGGATACAGAACATAAAGGCAAAATTAACATTGACGAACTAAGAGTAGGGTTGCATAAGCTAGGCCACCAAATTCCTGATGGAGATGTCCAAATACTTATGGAAGCTGGCGATGTAGACAAAGATGGGTACCTAGATTATGGAGAGTTTGTAGCCATTTCTATTCACCTGAGAAAGATATCCCATGATGAACACCTCCAAAGAGCATTCCAATTTTTTGATAAAAACGAATCCGGGTATATTGAACTTGAGGAGCTACGTAATGCCTTGGCTGATGAGGTTGACGCAAATAGTGAAGAAGTCATTAAAGCAATTTATGATGGAAGAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAATATTCGCGAGAGAGGTTTACCAGTCTAAGTCTCAAACTGATGAAGGAAGGGTCATTAGAATTGAACAACGAGGGTAGATGA 1563 0.3954 MENCYANLCSVFKKHKRKEKPEEDWPEKININTELVVLREPTGREIGLRYELGRELRRSEFGITYLCKDRETGEELACKSISKNKLRTAIAIEDVRREVEIMRHLPKHPNIVSLKYTYEDDDDVHLLMEHCEGGGNLLDCIFFRGGYNECSAASIIKTIVQVVQMCHEHGVMLRNLKPKNFLCADKKDTAYLKLTDFRSSIFFKPGERLNQIVGKLCYTAPEVLLRNYGPEIDIWSAGVILYFLLCGFPPFCAETDQELAEKIAQSDIYFKWKPWPNVSDNAKDLVKKMLDPDPKRRLTALEVLDHPWLQNAKTAPNVSLGEAVRARLMQFSVMNKLKKTALRVIADHLSVEEFAGIKEGFKVMDTEHKGKINIDELRVGLHKLGHQIPDGDVQILMEAGDVDKDGYLDYGEFVAISIHLRKISHDEHLQRAFQFFDKNESGYIELEELRNALADEVDANSEEVIKAIYDGRISYEEFAAMMKAGTDWRKASRQYSRERFTSLSLKLMKEGSLELNNEGR 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02050 520 CDD STKc_CAMK 49 308 - -
Trre1g02050 520 ProSiteProfiles EF-hand calcium-binding domain profile. 352 387 IPR002048 GO:0005509
Trre1g02050 520 Gene3D Transferase(Phosphotransferase) domain 1 133 319 - -
Trre1g02050 520 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Trre1g02050 520 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Trre1g02050 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 461 - -
Trre1g02050 520 Gene3D - 320 485 - -
Trre1g02050 520 Gene3D Phosphorylase Kinase; domain 1 38 131 - -
Trre1g02050 520 CDD EFh 428 483 IPR002048 GO:0005509
Trre1g02050 520 SMART efh_1 463 485 IPR002048 GO:0005509
Trre1g02050 520 SMART efh_1 428 456 IPR002048 GO:0005509
Trre1g02050 520 SMART efh_1 356 384 IPR002048 GO:0005509
Trre1g02050 520 SMART efh_1 392 420 IPR002048 GO:0005509
Trre1g02050 520 FunFam Calcium-dependent protein kinase 7 318 486 - -
Trre1g02050 520 SUPERFAMILY EF-hand 333 495 IPR011992 -
Trre1g02050 520 Coils Coil 443 463 - -
Trre1g02050 520 FunFam Maternal embryonic leucine zipper kinase 44 327 - -
Trre1g02050 520 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Trre1g02050 520 Pfam EF hand 429 454 IPR002048 GO:0005509
Trre1g02050 520 Pfam Protein kinase domain 52 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02050 520 SUPERFAMILY Protein kinase-like (PK-like) 47 321 IPR011009 -
Trre1g02050 520 ProSiteProfiles Protein kinase domain profile. 50 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02050 520 FunFam Calcium-dependent protein kinase 1 52 135 - -
Trre1g02050 520 Pfam EF-hand domain pair 368 415 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02050 Trre-Chr1 16304947 16309804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02050 1 518 EF-hand Containing Proteins AT5G19450 66.229 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre1g02050 Pkinase 5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02050 K13412 - gmx:100815320 744.577