Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02048 ATGGGAAATTGCTGTCTAAATCCATCCAGTACGAACAATAAACAAAAGGAAAAGCCCGGAAAAGATGAGCCGGTGAAAATAAACAACAGAAAACTGGTGGTATTGAAGGAGCCCACGGGCCGAGAAATTGGGCTTAGATACGAGTTAGGGAGGGAACTGGTGAGAAGAGAATTCGGAAAAATGTTACGGAAGGAATTAGGGAGAGGAGAATTCGGAATAACATATATATGCAAAGATAGAGAAACAGGAGAAGAACTTGCTTGCAAGTCGATTTCGAAGAATAAGCTTAGAACAGCGATTGATATTGAAGATGTTAGAAGAGAAGTTGAAGTCATGAGGCATTTACCTAAACATCCTAACATCGTTTCGTTGAAGTATACTTATGAAGACGACGATGATGTTCATCTTGTTATGGAACTTTGTCAAGGTCGTGAACTTGTTGATCGTATCGTTGCTAGAGGACACTACACCGAGCGCGCCGCCACTTATGTTGTTAAAGCCATCATCCAATTTGTTCAGATGTGCCACAAACATGGAGTGATGCATCGGGATCTCAAACCCGAGAACTTTGTGTTTGCAGACAAAAAGGAAACATCACCTTTGAAAGCTATTGACTATGGCTTGTCAATTTTCTTTAAACCAGGTGAAAGATTTAATGACATAGTTGGAAGTCCATATTACATGGCCCCTGAAGTATTACAGAGAAATTATGGTCCCGAAATTGATATCTGGAGTGGTGGAGTCATTCTTTACATCTTACTTTGTGGTGTCCCCCCGTTTTGGGCAGAAACTGAGCAGGGAGTTGCGCAAGCAATTATGCGATCTTTTATTGACTTTAAAAGGGAGCCATGGACAAAGGTTTCCGATAATGCGAAAGACCTTGTCAAGAAGATGCTTGATCCTGACCCAAAGCGTCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGTAAAGACAACTTCTAATGTTTCATCGGGAGAAAGTCTGAGCATGGTTCATTCAATTCTCTGTAATGAACAAACTTAA 1038 0.4114 MGNCCLNPSSTNNKQKEKPGKDEPVKINNRKLVVLKEPTGREIGLRYELGRELVRREFGKMLRKELGRGEFGITYICKDRETGEELACKSISKNKLRTAIDIEDVRREVEVMRHLPKHPNIVSLKYTYEDDDDVHLVMELCQGRELVDRIVARGHYTERAATYVVKAIIQFVQMCHKHGVMHRDLKPENFVFADKKETSPLKAIDYGLSIFFKPGERFNDIVGSPYYMAPEVLQRNYGPEIDIWSGGVILYILLCGVPPFWAETEQGVAQAIMRSFIDFKREPWTKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNVKTTSNVSSGESLSMVHSILCNEQT 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02048 345 Pfam Protein kinase domain 64 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02048 345 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g02048 345 CDD STKc_CAMK 62 317 - -
Trre1g02048 345 Gene3D Phosphorylase Kinase; domain 1 61 146 - -
Trre1g02048 345 Gene3D Transferase(Phosphotransferase) domain 1 147 342 - -
Trre1g02048 345 FunFam calcium-dependent protein kinase 13 146 326 - -
Trre1g02048 345 FunFam Calcium-dependent protein kinase 1 62 145 - -
Trre1g02048 345 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 324 - -
Trre1g02048 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Trre1g02048 345 SUPERFAMILY Protein kinase-like (PK-like) 63 326 IPR011009 -
Trre1g02048 345 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Trre1g02048 345 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02048 345 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02048 Trre-Chr1 16301108 16303367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02048 1 333 EF-hand Containing Proteins AT3G57530 67.908 8.83e-177 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre1g02048 Pkinase 2.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02048 K13412 - gmx:100815320 523.087