Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02045 ATGGAAAATTGCTATGCAAATCTATGCAATGTATTCAAGAAACACAAACGAAAGGAAAAGCCCGAGGAAGACTGGCCTGAGAAGATAAACATCAACATCAAAACTAAATTGATGGTGTTAAGAGAGCCCACGGGCCGAGAGATTGGGCTACGATACGAATTAGGGAGGGAATTAAGGAGAAGTGAATTCGGAATAACATACCTTTGCATAGACAGACAAACGGGAGAAGAACTTGCTTGTAAGTCGATTTCGAAGAATAAGCTTAGAACAGCAATTGATATTGAAGATGTTAGAAGAGAAGTTGAAATCATGAGACATTTACCTAAACACCCTAACATAGTTTCCTTGAAGTATACTTATGAAGATGATGATGATGTTCATCTTGTTATGGAACACTGTGAAGGTGGTGGTAACCTTCTTGATTGCATCTTCTTTAGAGGAAGGTATAACGAATGCTCCGCAGCTTCTATCATTAAAACCATCGTCCAAGTTGTTCAGATGTGCCACGAACATGGTGTGATGCTTCGGAATCTCAAAGCCGAGAACTTTTTGTGTGCAGACAAGAAAGAAACAGCATATTTGAAACTTACTGACTTTCGTTCTTCAATTTTCTTTAAACCAGGTGAAAGATTGAATCAGAGAATTGGAAAACTATATTACACGGCCCCTGAAGTATTACTGAGAAATTATGGCCCTGAAATTGATATTTGGAGTGCTGGAGTCATTCTCTATTTCTTACTTTCTGGTTTCCCTCCGTTTTGGGCAGAAACTGAGCAGGAACTTGCTGAAGAAATTGCACAATCTGATATTTACTTTAAAAGGAAGCCATGGCCAAAGGTTTCTAATAATGCAAAAGGCCTTGTTAAAAAGATGCTTGATCCTGACCCAACACGCCGGCTTACAGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGCTAAGACAGCTCCTAAGACAGCTCCTAATGTTTCATTGGGAGAAGCAGTCAGAGCAAGGCTCATGCAATTTTCTGTAATGAACAAACTTAAGAAAACCGCATTGAGGGTGATAGCAGATCATTTGTCTGTAGAAGAAGTTGCTGAAATAAAAGAGGGATTCGGAGTGATGGATACAGAACATAAAGGCAAAATTAACATTGACGAACTACGAGTAGGGTTGCATAAGCTAGGCCACCAAATTCCTGATGGAGATGTCCAAATACTTATGGAAGCTGGCGATGTAGACAAAGACGGGTACCTAGATTATGGAGAGTTTGTGGCCATTTCTATTCACCTGAGAAAGATATCCCATGATGAACACCTCCAAAGAGCATTCCAATTTTTCGATAAAAACGAATCCGGGTATATTGAACTTGAGGAGCTACGTAATGCCTTGGCTGATGAGGTTGACGCAAATAGTGAAGAAGTCATCAAAGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAATATTCGCGAGAGAGGTTTACCAGTCTAAGTCTCAAACTGATGAAGGAAGGGTCATTAGAATTGAACAACGAGGGTAGATGA 1602 0.4014 MENCYANLCNVFKKHKRKEKPEEDWPEKININIKTKLMVLREPTGREIGLRYELGRELRRSEFGITYLCIDRQTGEELACKSISKNKLRTAIDIEDVRREVEIMRHLPKHPNIVSLKYTYEDDDDVHLVMEHCEGGGNLLDCIFFRGRYNECSAASIIKTIVQVVQMCHEHGVMLRNLKAENFLCADKKETAYLKLTDFRSSIFFKPGERLNQRIGKLYYTAPEVLLRNYGPEIDIWSAGVILYFLLSGFPPFWAETEQELAEEIAQSDIYFKRKPWPKVSNNAKGLVKKMLDPDPTRRLTAQEVLDHPWLQNAKTAPKTAPNVSLGEAVRARLMQFSVMNKLKKTALRVIADHLSVEEVAEIKEGFGVMDTEHKGKINIDELRVGLHKLGHQIPDGDVQILMEAGDVDKDGYLDYGEFVAISIHLRKISHDEHLQRAFQFFDKNESGYIELEELRNALADEVDANSEEVIKAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFTSLSLKLMKEGSLELNNEGR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02045 533 FunFam Calcium-dependent protein kinase 1 54 137 - -
Trre1g02045 533 FunFam calcium-dependent protein kinase 13 139 319 - -
Trre1g02045 533 ProSiteProfiles EF-hand calcium-binding domain profile. 466 501 IPR002048 GO:0005509
Trre1g02045 533 SUPERFAMILY EF-hand 339 508 IPR011992 -
Trre1g02045 533 Gene3D - 325 498 - -
Trre1g02045 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 491 - -
Trre1g02045 533 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Trre1g02045 533 CDD EFh 434 496 IPR002048 GO:0005509
Trre1g02045 533 ProSitePatterns EF-hand calcium-binding domain. 479 491 IPR018247 -
Trre1g02045 533 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Trre1g02045 533 Pfam Protein kinase domain 54 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02045 533 SMART efh_1 398 426 IPR002048 GO:0005509
Trre1g02045 533 SMART efh_1 470 498 IPR002048 GO:0005509
Trre1g02045 533 SMART efh_1 362 390 IPR002048 GO:0005509
Trre1g02045 533 SMART efh_1 434 462 IPR002048 GO:0005509
Trre1g02045 533 Pfam EF-hand domain pair 374 421 IPR002048 GO:0005509
Trre1g02045 533 FunFam Calcium-dependent protein kinase 7 324 499 - -
Trre1g02045 533 Pfam EF-hand domain pair 433 496 IPR002048 GO:0005509
Trre1g02045 533 ProSiteProfiles Protein kinase domain profile. 52 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02045 533 Gene3D Transferase(Phosphotransferase) domain 1 135 324 - -
Trre1g02045 533 SUPERFAMILY Protein kinase-like (PK-like) 49 324 IPR011009 -
Trre1g02045 533 Coils Coil 449 469 - -
Trre1g02045 533 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Trre1g02045 533 CDD STKc_CAMK 51 310 - -
Trre1g02045 533 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Trre1g02045 533 Gene3D Phosphorylase Kinase; domain 1 42 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02045 Trre-Chr1 16279405 16284019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02045 1 531 EF-hand Containing Proteins AT5G19450 67.412 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre1g02045 Pkinase 2.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02045 K13412 - gmx:100815320 763.066