Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02044 ATGAAGACAGTTGTTGTGTTAAGAGAGCCCACGGGGCGAGAGATTGGGCTACGATACGAATTAGGAAGAGAACTATGGAGAGTTGAATCTGGAATAACATACCTTTGCAAAGACAGACAAACGGGAGAGAAACTTGCTTGTAAGTCGATTTCGAAGAATAAGCTTAGAAATGCGATTGATATTGAAGATGTTAGAAGAGAAGTTCATATCATGAGGCATTTACCTACACATCCTAACATAGTTACGTTGAAAGATACATATGAAGATGATGATGATGTTCATCTTGTTATGGAACTCTGTCAAGGTGGTAACCTTCTGCATCACATCGTTGCTGGAGCACGTCACACCGAAAGCTCCGCAGCTTATGTCATTGAAACCGTCGTCAAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCTTCGGAATCTCAAACTCGAAAACTTGTTGTTTGCAAACAAGACGGATATAGCACCTTTGAAAGTTGCTGACTTTCATTCGTCAATTTCCTTTCAACCAGGTGAAAGATTGAATCAGATAATTGGAAGTCCATATTACATGGCCCCTGAAGTATTAAAGAGAAATTATGGTCCCGAAATTGATATCTGGAGTGCTGGAGTCATTCTTTACATCTTACTTTGTGGTCTCCCTCCGTTGTGGGCCGATTTGGATCCTCCGCAGCAAATCTGTCTGCTAAAATCTCTGCTGCAAGAGATAAACGAAACTGGGCAGGGAATTACTGAATCAATTATAGAATCTGTTATTGACTTTAAAAGGGAGCCATGGCCAAATGTTTCTGATAATGCAAAAGACCTTGTTAAAAAAATGCTTGATCCTGACCCAAAATGCCGGCTTACTGCACAAGAAGTGTTAGCTCATCCATGGTTGATTAAGTATGTTAAGAAATCCAAACAAGACCGTATTTTTATAAGGCCTGATGCACATGAATGGAAGAGGCTTAATGCACCAAACCTTGTTATGAAGATGCTTACTGCACATGAAGAGTTGGGTCATCCATCGTTGCTGAATGCAAAGATTGCTCCTAATGTTTCATCGGGAGAAACAATCAGAGTAAAGCTATTGCAATATTCTGTAATGAACCATCTTACGAAAACAACATTTATGTTGATTACAGAGCATTTGTCTGCAATAGAATATGTTTTACAATCAGAAAGATCCTGGGTGAGGGATTTAGGATGTGGATTCAGCAGGATTGACGACAATGAAGTACGAGTAAGATTGCAGAAGCTAGGCCAACGACGAATTCCTGATGTAGATGTGAAAAGACTAGTGAAGGCTTATTTTGATGCAACTGGCATACAAGGTTACATTGATTATGGAAAGATTCCAGCCATTCTAATTCAACTGAGAAAGATTTCCCATGTAGAACACGTCAATGGAGCATTTCACTTTTTTGATAGAAACCAATCTGGGTATATTGAACTTCAGGAGCTACGTAAGGCCTTAGCTGATGAGATTAACACAAACAATAAACAAGTCATTAATGCAATTATGCATTGCGTGAACACAAATAAGGATGGAAGAATTAGTTATGAGGAAATTACCAATCGGAGTTTCAAACTGATGAAGGAGTGGTCATCTGAATTGATCAATGACTAA 1620 0.392 MKTVVVLREPTGREIGLRYELGRELWRVESGITYLCKDRQTGEKLACKSISKNKLRNAIDIEDVRREVHIMRHLPTHPNIVTLKDTYEDDDDVHLVMELCQGGNLLHHIVAGARHTESSAAYVIETVVKVVQMCHKHGVMLRNLKLENLLFANKTDIAPLKVADFHSSISFQPGERLNQIIGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGLPPLWADLDPPQQICLLKSLLQEINETGQGITESIIESVIDFKREPWPNVSDNAKDLVKKMLDPDPKCRLTAQEVLAHPWLIKYVKKSKQDRIFIRPDAHEWKRLNAPNLVMKMLTAHEELGHPSLLNAKIAPNVSSGETIRVKLLQYSVMNHLTKTTFMLITEHLSAIEYVLQSERSWVRDLGCGFSRIDDNEVRVRLQKLGQRRIPDVDVKRLVKAYFDATGIQGYIDYGKIPAILIQLRKISHVEHVNGAFHFFDRNQSGYIELQELRKALADEINTNNKQVINAIMHCVNTNKDGRISYEEITNRSFKLMKEWSSELIND 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02044 539 CDD STKc_CAMK 18 295 - -
Trre1g02044 539 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Trre1g02044 539 Gene3D Phosphorylase Kinase; domain 1 9 101 - -
Trre1g02044 539 Gene3D Transferase(Phosphotransferase) domain 1 102 333 - -
Trre1g02044 539 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Trre1g02044 539 Gene3D - 382 454 - -
Trre1g02044 539 Pfam EF-hand domain pair 467 521 IPR002048 GO:0005509
Trre1g02044 539 ProSiteProfiles Protein kinase domain profile. 19 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02044 539 SUPERFAMILY EF-hand 404 522 IPR011992 -
Trre1g02044 539 SUPERFAMILY Protein kinase-like (PK-like) 18 336 IPR011009 -
Trre1g02044 539 CDD EFh 468 520 IPR002048 GO:0005509
Trre1g02044 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 505 - -
Trre1g02044 539 Gene3D - 359 520 - -
Trre1g02044 539 SMART efh_1 500 528 IPR002048 GO:0005509
Trre1g02044 539 SMART efh_1 464 492 IPR002048 GO:0005509
Trre1g02044 539 Pfam Protein kinase domain 29 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02044 539 FunFam Calcium-dependent protein kinase 1 21 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02044 Trre-Chr1 16268996 16276753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02044 6 522 EF-hand Containing Proteins AT5G19450 51.644 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre1g02044 Pkinase 4.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02044 K13412 - gmx:100815320 553.903