Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02038 ATGGGAACTCCAGAATTCCCAGATCTCGGAAAACACTGTGCTTTCTCCGATTGCAGCCTCATTGATTTCTTACCCTTCACTTGCGATCGCTGCAACCAGGTGTATTGTTTGGAACACCGAAGTTATATCAAACATCAGTGTACAAAAGCTGACAAGCAAGATGTCACTGTAGTAATATGTCCACTTTGCGCCAAAGGAGTTCGCCTAGTTCCTGAACAAGATCCAAACATAACATGGGAGAATCATGTTAACATCGACTGCGACCCATCAAATTATGAAAAAGTTACAAAGAAGAAAAAATGCCCTGCAGCTGGATGCAAAGAGATCTTAGTATTCTCAAACACAATTAAGTGCAGGGATTGCATGGTAGACCATTGTTTGAAGCATAGGTTTGGACCTGATCACAAATGTCCAGGACCGAAAAAGTTGGAATCAAATTTCTCATTTATGAGTCTAATGAGTAGGAATAAAAAACTGGACTCTAAAAAAACCAATTCAAGTTCCACCTCCTCCTCGTCTAAGTGGGCAACGAGCTTTCTTAATGCCGCTTCTAATATTCGAGCTTCAGCTGAGGCTGGAATGTCGAAGTTGAGTGGTGAAATTAACCAAGCATGGGGGACATCAAGTGATGGTGGGGGCAAGAGCAATAGCAGTGGTCAAGTTGAGCAATGCCCTCAATGTGATGCTAAGTTTTCCTCGGTCACTACTTTGGTGGATCATGTACAGAAAGTTCATGAAAGAAGCGGTAATCGATCTGCTGCAAAAGTTACAATTGATGTGTGTCCTAAGTGTAGTAAAGGATTCAGAGACCCTGTGTCCCTTGTGGAGCATGTTGAGAGAGATCACGGCGGCAGTTCGAGTCGAGAGCATAGGTAG 876 0.4315 MGTPEFPDLGKHCAFSDCSLIDFLPFTCDRCNQVYCLEHRSYIKHQCTKADKQDVTVVICPLCAKGVRLVPEQDPNITWENHVNIDCDPSNYEKVTKKKKCPAAGCKEILVFSNTIKCRDCMVDHCLKHRFGPDHKCPGPKKLESNFSFMSLMSRNKKLDSKKTNSSSTSSSSKWATSFLNAASNIRASAEAGMSKLSGEINQAWGTSSDGGGKSNSSGQVEQCPQCDAKFSSVTTLVDHVQKVHERSGNRSAAKVTIDVCPKCSKGFRDPVSLVEHVERDHGGSSSREHR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02038 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Trre1g02038 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Trre1g02038 291 SMART c2h2final6 259 282 IPR013087 -
Trre1g02038 291 SMART c2h2final6 222 245 IPR013087 -
Trre1g02038 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Trre1g02038 291 ProSitePatterns Zinc finger C2H2 type domain signature. 224 245 IPR013087 -
Trre1g02038 291 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Trre1g02038 291 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Trre1g02038 291 SUPERFAMILY beta-beta-alpha zinc fingers 223 278 IPR036236 -
Trre1g02038 291 ProSitePatterns Zinc finger C2H2 type domain signature. 261 282 IPR013087 -
Trre1g02038 291 Gene3D - 2 60 IPR035896 -
Trre1g02038 291 MobiDBLite consensus disorder prediction 202 222 - -
Trre1g02038 291 Pfam C2H2-type zinc finger 223 245 - -
Trre1g02038 291 Gene3D - 81 157 IPR035896 -
Trre1g02038 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 287 IPR013087 -
Trre1g02038 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 250 IPR013087 -
Trre1g02038 291 Gene3D Classic Zinc Finger 197 285 - -
Trre1g02038 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 248 - -
Trre1g02038 291 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Trre1g02038 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Trre1g02038 291 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02038 Trre-Chr1 16235699 16238163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02038 1 286 C2H2 Transcription Factor Family AT2G41835 62.937 6.56e-127 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02038 zf-AN1 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02038 - - gmx:100786272 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02038 1 16235699 16238163 Trre1g02038 1 16235699 16238163 ECH
Trre13g03439 13 42134982 42136594 Trre1g02038 1 16235699 16238163 PCT