Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02034 ATGATGCATGAGTTCATAGGTGATTTGTCTGTTAAGCAGCTTCCCCAACTCATTGTTGGGTTTGAGGATGGACTTAGTATTGTTGCTGTTAGGGTGGATTCTGTTGTTGAAGGGATAGATATGTGGTATTCTGAAGATGGTTCAAAGAATTCTCCCAGGTTTAGGATGAAGCTCAAAGTTAGGGATGAGACTGATTTTGTTGTGTTTTCTATGTTCGATCGTGATGTTCAGTTGTTGGCCATGGAGACATGTCCTCTTTTGCTCTCAATGGGTGAAAGTTGTTCCCTTTATCCTGATGAGATTGAGTGTTTTTATGGGGATGCCATATTGTGCAAGGTGGAGAAGAGGGACTCTAATGATGTTGATAACTTGCCTTCCTTTAGAGTTGTATCAGTGTGCAATGAAGTTGGTATTCTTGATATGTTCTATGATACATATCTACCTGAAATTGATGGCCCTGTGGACGGTGTGAATTCCGATTTGGTGAAAGATTCTTCTAATTGCAGTCTGCTCTGCAATTCTGTCGTTAAATTTGAGAGTGCTGGTGATATTGTTGATGTTTCAGTGTCTTCTCATGACACTTTCGTTGGAAATCTCACTCCTGCGCTTGGATCTGAATATGAGGGGCAAAACATTAGTCCTCCTATGTATCGTTCTTGCTACCGCAGACAAAGGAAGAGATCCCTCTCTGGGCTGCCTGCGAGCGTTGAGTCCGTTGTCTACTCTAGGAGGAGCATATGTGCAAAGAGACGGCTGGAGTTTGATGAGACTGGACCCTCTTCTCCTGTTAAAAAGATTGCTTGCATGGTTGAGTTTGACAAAGGTGGTTCTGGCACCATGGATGCTGTTTCTCTTCGTGTATTTTATTATGTGTGGCGTTGGTCCTTGCTCATGGCGTTAGTAAGTAAAGCTATTGTTTTTGATGATATCATGGATGTGTTTACTGAAAAGGTTGATGGAGTGTATGAAGTTAGGGTTTTGAAGAGGTGGTTTCTTCCTGATTATTCTAATCCTGAGTTTTTTGGAGGCATTAACATGGTGCTTATTGATAAGAATGGCCACAAGATTCAAGCTATGATCCCCAATACTATGATGTCCCTCTTTGATTCTCGGGTTGAAGAAGGGAAGGTTTACATAATCTCATCTCCCTCGGTGAGGTTTAACTTTGGTACTGTTATGCCAACTTATCATAGGTACAAGTTTGTTTTTAACAAGGAAACCAAGGTTGTACCATCTGAAAACTCTTCCATTCCTATCCATGGATTCTCTCTGATTGGAGCTGACAGTGTATTGTCTAAGAGGAAGTGCTTTAGGTATTTGGTTGATGTTGTTGGAGGTGTGACAACTGTTGTTCACGATAAGAATTTCTATTCAGATGGGACTGTGACTAAGTCTGTTACTTTTAAATTGAATGATCAGAGCAAGTCTTTCATTTGTGAGTTGACTGGTGACTTGGTTGAAGAATTTCGCAAGGGAATGAAGGCTGCTTCTGGTGGATTTCCTCTAATTGTGTTGCAATTTGTGAAAATTGTCGTTGTTCAGGGATTTACACAGGTTCAAGGTGTTGAGGGTGTTACTAGAATTTTTGTGAATCCGAATACTCCTGATGTTCAAAATTTTAGAAATGGTTTGGTTCGTTATTTGACTACCAGTCTAGATTATGGAGGTCTCAATGCTTTATCTGCTGCTGGGAGTATTTCCCACCTTTTGGATTTTCTCAAAGATTATCCTGTCAAAAGTATTGTTGAGTTGAAATCCAGTGAGGAGCTTGGTGTTTTTGTTGTTAATGTAAGAATGGTGGATATTGTTGCCATCGATCCTTGGTGGTATCCTGTGTGTGGATGTCGTAAGATTTTTGACAAGTATCTTGGAGCCTTTTATTGCAGTGGATGTCGTGAACCCATATATGATGTTGTTCCAAAGGTGAAAATGACTATTGAGGTTGAAGATGAGAGTGGAGCTGCTGAGTTTTTTGCTTTCGATCATGTCATGGTTAATGTGTCTGGTTTGAATTCTGCTGTTAATGGAATTACCATTGATTCGTTCTTCCGTGCCTTTGAGTCTGTAATGGGAAAGAGTCTTATGTTTGTTGTCAAAAAGAAAACTCATGATCCTGAGTTAATGAATTCCGAATTTGAAGCTCTTCGTGTGTCTGATCATCCGTCTATTATCAAGTATTTTGCTGCTTTGGGTCAGTATAATACTCCATCGAAGGATTTCGTTAGGAAAGTTAGACGTGATGATAGGATGAAGCAGCCAATGGTTGTTGGTCCCTCTACCTATACAACCTTTGAGCTGATGGATTACTATTTGGGATATGCTCATCGTAGGCCTTCGTGTCAGGATGGTGCGAGTACCTCTGGTTCAAAGCGTCCAAAAAACTAG 2385 0.4059 MMHEFIGDLSVKQLPQLIVGFEDGLSIVAVRVDSVVEGIDMWYSEDGSKNSPRFRMKLKVRDETDFVVFSMFDRDVQLLAMETCPLLLSMGESCSLYPDEIECFYGDAILCKVEKRDSNDVDNLPSFRVVSVCNEVGILDMFYDTYLPEIDGPVDGVNSDLVKDSSNCSLLCNSVVKFESAGDIVDVSVSSHDTFVGNLTPALGSEYEGQNISPPMYRSCYRRQRKRSLSGLPASVESVVYSRRSICAKRRLEFDETGPSSPVKKIACMVEFDKGGSGTMDAVSLRVFYYVWRWSLLMALVSKAIVFDDIMDVFTEKVDGVYEVRVLKRWFLPDYSNPEFFGGINMVLIDKNGHKIQAMIPNTMMSLFDSRVEEGKVYIISSPSVRFNFGTVMPTYHRYKFVFNKETKVVPSENSSIPIHGFSLIGADSVLSKRKCFRYLVDVVGGVTTVVHDKNFYSDGTVTKSVTFKLNDQSKSFICELTGDLVEEFRKGMKAASGGFPLIVLQFVKIVVVQGFTQVQGVEGVTRIFVNPNTPDVQNFRNGLVRYLTTSLDYGGLNALSAAGSISHLLDFLKDYPVKSIVELKSSEELGVFVVNVRMVDIVAIDPWWYPVCGCRKIFDKYLGAFYCSGCREPIYDVVPKVKMTIEVEDESGAAEFFAFDHVMVNVSGLNSAVNGITIDSFFRAFESVMGKSLMFVVKKKTHDPELMNSEFEALRVSDHPSIIKYFAALGQYNTPSKDFVRKVRRDDRMKQPMVVGPSTYTTFELMDYYLGYAHRRPSCQDGASTSGSKRPKN 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02034 794 Gene3D - 307 411 IPR012340 -
Trre1g02034 794 Gene3D - 416 546 IPR012340 -
Trre1g02034 794 SUPERFAMILY Nucleic acid-binding proteins 438 542 IPR012340 -
Trre1g02034 794 Gene3D - 574 720 IPR012340 -
Trre1g02034 794 CDD RPA1_DBD_A_like 324 409 - -
Trre1g02034 794 SUPERFAMILY Nucleic acid-binding proteins 576 703 IPR012340 -
Trre1g02034 794 Pfam Domain of unknown function DUF223 346 432 IPR003871 -
Trre1g02034 794 CDD RPA1_DBD_B_like 454 541 - -
Trre1g02034 794 SUPERFAMILY Nucleic acid-binding proteins 325 414 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02034 Trre-Chr1 16207541 16212382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02034 323 661 Core DNA Replication Machinery Family AT5G08020 23.034 1.27e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02034 - - tpra:123914763 508.834