Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02033 ATGTCTTCTTCCGAGAAAAATTTTTCACAGATGATGCATGAGTTCATAGGTGATTTGTCTGTTAAGCAGCTTCCCCAACTCATTGTTGGGTTTGAGGATGGACTTAGTATTGTTGCTGTTAGGGTGGATTCTGTTGTTGAAGGGATAGATATGTGGTATTCTGAAGATGGTTCAAAGAATTCTCCCAGGTTTAGGATGAAGCTCAAAGTTAGGGATGAGACTGATTTTGTTGTGTTTTCTATGTTCGATCGTGATGTTCAGTTGTTGGCCATGGAGACATGTCCTCTTTTGCTCTCAATGGGTGAAAGTTGTTCCCTTTATCCTGATGAGATTGAGTGTTTTTATGGGGATGCCATATTGTGCAAGGTGGAGAAGAGGGACTCTAATGATGTTGATAACTTGCCTTCCTTTAGAGTTGTATCAGTGTGCAATGAAGTTGGTATTCTTGATATGTTCTATGATACATATCTACCTGAAATTGATGGCCCTGTGGACGGTGTGAATTCCGATTTGGTGAAAGATTCTTCTAATTGCAGTCTGCTCTGCAATTCTGTCGTTAAATTTGAGAGTGCTGGTGATATTGTTGATGTTTCAGTGTCTTCTCATGACACTTTCGTTGGAAATCTCACTCCTGCGCTTGGATCTGAATATGAGGGGCAAAACATTAGTCCTCCTATGTATCGTTCTTGCTACCGCAGACAAAGGAAGAGATCCCTCTCTGGGCTGCCTGCGAGCGTTGAGTCCGTTGTCTACTCTAGGAGGAGCATATGTGCAAAGAGACGGCTGGAGTTTGATGAGACTGGACCCTCTTCTCCTGTTAAAAAGATTGCTTGCATGGTTGAGTTTGACAAAGGTGGTTCTGGCACCATGGATGCTGTTTCTCTTCGTGTATTTTATTATGTGTGGCGTTGGTCCTTGCTCATGGCGTTAGTAAGTAAAGCTATTGTTTTTGATGATATCATGGATGTGTTTACTGAAAAGGTTGATGGAGTGTATGAAGTTAGGGTTTTGAAGAGGTGGTTTCTTCCTGATTATTCTAATCCTGAGTTTTTTGGAGGCATTAACATGGTGCTTATTGATAAGAATGGCCACAAGATTCAAGCTATGATCCCCAATACTATGATGTCCCTCTTTGATTCTCGGGTTGAAGAAGGGAAGGTTTACATAATCTCATCTCCCTCGGTGAGGTTTAACTTTGGTACTGTTATGCCAACTTATCATAGGTACAAGTTTGTTTTTAACAAGGAAACCAAGGTTGTACCATCTGAAAACTCTTCCATTCCTATCCATGGATTCTCTCTGATTGGAGCTGACAGTGTATTGTCTAAGAGGAAGTGCTTTAGGTATTTGGTTGATGTTGTTGGAGGTGTGACAACTGTTGTTCACGATAAGAATTTCTATTCAGATGGGACTGTGACTAAGTCTGTTACTTTTAAATTGAATGATCAGAGCAAGTCTTTCATTTGTGAGTTGACTGGTGACTTGGTTGAAGAATTTCGCAAGGGAATGAAGGCTGCTTCTGGTGGATTTCCTCTAATTGTGTTGCAATTTGTGAAAATTGTCGTTGTTCAGGGATTTACACAGGTTCAAGGTGTTGAGGGTGTTACTAGAATTTTTGTGAATCCGAATACTCCTGATGTTCAAAATTTTAGAAATGGTTTGGTTCGTTATTTGACTACCAGTCTAGATTATGGAGGTCTCAATGCTTTATCTGCTGCTGGGAGTATTTCCCACCTTTTGGATTTTCTCAAAGATTATCCTGTCAAAAGTATTGTTGAGTTGAAATCCAGTGAGGAGCTTGGTGTTTTTGTTGTTAATGTAAGAATGGTGGATATTGTTGCCATCGATCCTTGGTGGTATCCTGTGTGTGGATGTCGTAAGATTTTTGACAAGTATCTTGGAGCCTTTTATTGCAGTGGATGTCGTGAACCCATATATGATGTTGTTCCAAAGGTGAAAATGACTATTGAGGTTGAAGATGAGAGTGGAGCTGCTGAGTTTTTTGCTTTCGATCATGTCATGGTTAATGTGTCTGGTTTGAATTCTGCTGTTAATGGAATTACCATTGATTCGTTCTTCCGTGCCTTTGAGTCTGTAATGGGAAAGAGTCTTATGTTTGTTGTCAAAAAGAAAACTCATGATCCTGAGTTAATGAATTCCGAATTTGAAGCTCTTCGTGTGTCTGATCATCCGTCTATTATCAAGTATTTTGCTGCTTTGGGTCAGTATAATACTCCATCGAAGGATTTCGTTAGGAAAGTTAGACGTGATGATAGGATGAAGCAGCCAATGGTTGTTGGTCCCTCTACCTATACAACCTTTGAGCTGATGGATTACTATTTGGGATATGCTCATCGTAGGCCTTCGTGTCAGGATGGTGCGAGTACCTCTGGTTCAAAGCGTCCAAAAAACTAG 2415 0.405 MSSSEKNFSQMMHEFIGDLSVKQLPQLIVGFEDGLSIVAVRVDSVVEGIDMWYSEDGSKNSPRFRMKLKVRDETDFVVFSMFDRDVQLLAMETCPLLLSMGESCSLYPDEIECFYGDAILCKVEKRDSNDVDNLPSFRVVSVCNEVGILDMFYDTYLPEIDGPVDGVNSDLVKDSSNCSLLCNSVVKFESAGDIVDVSVSSHDTFVGNLTPALGSEYEGQNISPPMYRSCYRRQRKRSLSGLPASVESVVYSRRSICAKRRLEFDETGPSSPVKKIACMVEFDKGGSGTMDAVSLRVFYYVWRWSLLMALVSKAIVFDDIMDVFTEKVDGVYEVRVLKRWFLPDYSNPEFFGGINMVLIDKNGHKIQAMIPNTMMSLFDSRVEEGKVYIISSPSVRFNFGTVMPTYHRYKFVFNKETKVVPSENSSIPIHGFSLIGADSVLSKRKCFRYLVDVVGGVTTVVHDKNFYSDGTVTKSVTFKLNDQSKSFICELTGDLVEEFRKGMKAASGGFPLIVLQFVKIVVVQGFTQVQGVEGVTRIFVNPNTPDVQNFRNGLVRYLTTSLDYGGLNALSAAGSISHLLDFLKDYPVKSIVELKSSEELGVFVVNVRMVDIVAIDPWWYPVCGCRKIFDKYLGAFYCSGCREPIYDVVPKVKMTIEVEDESGAAEFFAFDHVMVNVSGLNSAVNGITIDSFFRAFESVMGKSLMFVVKKKTHDPELMNSEFEALRVSDHPSIIKYFAALGQYNTPSKDFVRKVRRDDRMKQPMVVGPSTYTTFELMDYYLGYAHRRPSCQDGASTSGSKRPKN 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02033 804 SUPERFAMILY Nucleic acid-binding proteins 335 424 IPR012340 -
Trre1g02033 804 Gene3D - 426 556 IPR012340 -
Trre1g02033 804 CDD RPA1_DBD_A_like 334 419 - -
Trre1g02033 804 Gene3D - 317 421 IPR012340 -
Trre1g02033 804 Pfam Domain of unknown function DUF223 356 442 IPR003871 -
Trre1g02033 804 SUPERFAMILY Nucleic acid-binding proteins 586 713 IPR012340 -
Trre1g02033 804 SUPERFAMILY Nucleic acid-binding proteins 448 552 IPR012340 -
Trre1g02033 804 Gene3D - 584 730 IPR012340 -
Trre1g02033 804 CDD RPA1_DBD_B_like 464 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02033 Trre-Chr1 16207541 16212412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02033 333 671 Core DNA Replication Machinery Family AT5G08020 23.034 1.63e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02033 - - tpra:123914763 508.834