Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02015 ATGGGAAGCAGAGATACTGAGATTGAGAAGACAGGCAATTTGATTAGAAGACAAGTTGCCTTCTCCGAGCGACGAAAGAGTTTGTTCAAGAATGCCAAAGAATTGTCTATTCTTTGTGATGCAGAGGTCGGTGTCATCGTATTTTCTAGCACTGGCAAGCTCTATGAGTTCTCAAGGCCAAGCATGGAGCACATTCTTTCAAGGTACGGTGCAGAGAAACAGCAGCCTAATGCTCAGCCTCCACCACAAGTTGTGGAGCTTGATACTCCCATTCTGCAGGAAGAAATGGCAAAACTGCGCTCAGCTTACGTAAGAATGACGGGTAAGGAGCTTGATGGATTGCAGATGAAGGAACTGCAGGACCTAGAAAATCAGCTGAGTGAAGCGATATTAGCTGTCAAAACCAAGAAGGAACAAGTGCTTGTTGAACAACTTGAGAAATCAAAGTTACAGGAGCAAATGGCTATGGCAGAGATTGAAGATCTGCGTAAACAACTTGAGGAGATAAAGAATAAAACAAAGTCAGAGTTAGGGTCGTCATCATCAGATCATGGTACCAGGTACAAATCATTGAGGATGAGAGCATCCAACAGAGGGAAAGTCAAGTAG 609 0.4384 MGSRDTEIEKTGNLIRRQVAFSERRKSLFKNAKELSILCDAEVGVIVFSSTGKLYEFSRPSMEHILSRYGAEKQQPNAQPPPQVVELDTPILQEEMAKLRSAYVRMTGKELDGLQMKELQDLENQLSEAILAVKTKKEQVLVEQLEKSKLQEQMAMAEIEDLRKQLEEIKNKTKSELGSSSSDHGTRYKSLRMRASNRGKVK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02015 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre1g02015 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre1g02015 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre1g02015 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 57 IPR002100 GO:0003677|GO:0046983
Trre1g02015 202 Coils Coil 119 139 - -
Trre1g02015 202 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Trre1g02015 202 MobiDBLite consensus disorder prediction 170 202 - -
Trre1g02015 202 Pfam K-box region 91 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre1g02015 202 Coils Coil 142 179 - -
Trre1g02015 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre1g02015 202 ProSiteProfiles K-box domain profile. 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre1g02015 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 5 164 - -
Trre1g02015 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre1g02015 202 SUPERFAMILY SRF-like 4 72 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02015 Trre-Chr1 16060221 16062133 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02015 1 167 MADS-box Gene Family AT3G57390 46.369 4.88e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre1g02015 K-box 6.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02015 - - tpra:123891316 314.309