Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02014 ATGGGGAGAGGAAAAATTGAGATTAAGAAAATTGAGAATTTGAATAGCAGGCAAGTTACTTTTTCTAAGAGAAGAAATGGTTTGCTTAAGAAAGCAAAAGAGTTGTCTGTTCTTTGTGATGCAGAGGTTGCTGTTATCATATATTCTGGTACTGGAAAGCTTTATGAGTTTTCAAGCAAAAGCATGGAGCACATCCTTTCAAGGTACAGTACTAAAAGTCTTGATTTGAATAATGGAGCAGAGCAGCAACACCAACAACAACTTAGTGATGAGCCTCCAGCAGAAGTTGTGGAGCCTGATACTGCCCTTCTGCAAGAAGAAATAACAAAACTTCGTTCAGCTTACTTAAGGATGAGTGGTAAGGAGCTTGATGGATTGGGCCTTAAGGAACTGCAGCACCTAGAAAATCAATTATGTGAAGGGATATGTGCTGTCAAAAATAAGAAGGAACAAGTGTTTGTTGAACAACTTAAGAGATCCAAGTTACAGGAGCAAAAGGCTAAGATGGAGAATGAAGTGCTTCGCAAACAACTTGAAGAGATTGAAAACAAAAGAAAGGAAAAGTGCCTTGAATTTGATTCATTGGATAGGACAATTTCCGTCAACGGTTCAAAACCTCTTTTTAATTTTGCTTCTGAGGATAATGAGATTTCAGATACTTCTTTGCAGTTAGGGTTGTCATCAGATTATGGTCTCAAAAGGAAAGCCTTGAAGATAGAACCTTGCAACGATTCGGGAAGTCAAGTGGCTTCACAGTGA 759 0.3847 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIYSGTGKLYEFSSKSMEHILSRYSTKSLDLNNGAEQQHQQQLSDEPPAEVVEPDTALLQEEITKLRSAYLRMSGKELDGLGLKELQHLENQLCEGICAVKNKKEQVFVEQLKRSKLQEQKAKMENEVLRKQLEEIENKRKEKCLEFDSLDRTISVNGSKPLFNFASEDNEISDTSLQLGLSSDYGLKRKALKIEPCNDSGSQVASQ 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02014 252 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Trre1g02014 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre1g02014 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre1g02014 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre1g02014 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre1g02014 252 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Trre1g02014 252 Coils Coil 157 198 - -
Trre1g02014 252 ProSiteProfiles K-box domain profile. 94 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre1g02014 252 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Trre1g02014 252 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Trre1g02014 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre1g02014 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Trre1g02014 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre1g02014 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre1g02014 252 Pfam K-box region 99 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02014 Trre-Chr1 16054218 16058297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02014 1 225 MADS-box Gene Family AT3G57390 48.018 5.77e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre1g02014 K-box 5.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02014 - - gmx:100792278 357.836