Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02007 ATGGAGAGTTTTCTGAATCCCAAAGATTTCGAATTGGAAAACAAGGATCGTTCAATAGAAAATCTCAGTAGATGGAGATCTGCTGTTTCTTTGGTCAAGAATCCTCGGAGGAGGTTTCGTCACGTTGCAGATCTAGTCAAACGCCGTCAAGCAGCGGAAAATCAAAAGAAAATTCAGAACTTATTAGAGTTGGAAGTGGAATCCTATAAGCAAAGAGAGGGGGAGAAGAGTGTCTGA 237 0.4135 MESFLNPKDFELENKDRSIENLSRWRSAVSLVKNPRRRFRHVADLVKRRQAAENQKKIQNLLELEVESYKQREGEKSV 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02007 78 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 49 IPR024750 GO:0005516
Trre1g02007 78 Gene3D - 17 67 - -
Trre1g02007 78 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02007 Trre-Chr1 16013759 16014546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02007 1 66 Primary Pumps ATPases AT2G22950 45.455 8.54e-13 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02007 K01537 - gmx:100785768 85.1149