Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02006 ATGGTCAAGATACCATTTATGATGGTGATGAAAATTCAGAAATTGGCAAAGGGGAGGATTCGCACTGTTATCAATGTTCAACGAGCAGCACTGCATTTTACGGATGCCATTAGTACACCTGAATTCAAGGTATCAGAAAAGACAGCAGCAGCTGGTTTTGGTATCGAACCAGATGATATTGCATCAGTTGTTCGAAGCCATGATTACAAGAACTATAAAAATGTTGGTGAAGTTCAAGGGATTATAAGTAAACTTTCAGTCTCAGTCGATGAAGGTGTCAGTCAAGACAGTATAGATAGTAGGCAAGAGATTTATGGACTCAACCGATATACCGAGAAGCCTTCTAAAAGCTTTCTGATGTTTGTTTGGGATGCACTGCATGACATGACCCTGATCATTCTAATTGTTTGTGCTTTAGTTTCCATAGGCATAGGGCTTCCCACTGAAGGGTTCCCAAAGGGGGTTTATGATGGTGTTGGAATCATACTTAGTATATTCTTGGTAGTCACTGTTACTGCTGTAAGTGACTACCAGCAATCTCTACAGTTCTTAGATTTGGACAAAGAGAAGAAAAAGATCTCTATTCATGTTACCAGGGATGGTAAAAGACAGAAGGTCTCAATTTACGACTTGGTAGTAGGAGATATAGTTCATTTGTCTACTGGTGATCAAGTTCCAGCTGATGGAATTTTTATACAAGGATATTCATTGTTAATCGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATATAGACAGTCGAAGACCTTTTCTTCTTTCAGGAACCAAAGTGCAAGACGGTCAGGGGAAGATGATAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTGATGGAAACTTTGAGTGAGGGAGGAGAGGATGAGACTCCACTTCAGGTGAAATTGAATGGAGTTGCTACAGTTATTGGTAAAATCGGTTTAACTTTTGCTGTTCTGACATTTTTGGTGTTGACAATACGGTTTGTGGTTGAAAAAGCAGTTGATGGAAGCTTCAGTAGTTGGTCTTCAGAGGATGCACTAAAGCTACTAGACTACTTTGCTATTGCTGTAACCATAATTGTTGTTGCGATTCCTGAAGGACTACCGTTAGCTGTAACACTCAGTCTTGCTTTTGCGATGAAAAAATTGATGACTGATAGGGCTCTTGTGAGACATCTTTCTGCTTGTGAGACTATGGGATCAGCTAGTTGCATTTGCACCGATAAGACAGGAACATTGACAACCAACCATATGGTGGTCGATAAAATTTGGATATGCGAAAAGACCACCGAGATAAAAGGTGATGAGAGTACTGATAAATTGAAATCAGAGATATCTGATGAAGTTCTAAGCATCCTTTTGCAGGCTATATTTCAGAATACTTCGTCGGAAGCAGTTAAAGACAAAGATGGAAAGCAGACAATATTGGGAACACCAACAGAATCTGCATTATTGGAATTTGGCTTGGTTTCAGGTGGTGATTTCGATGAACAGCGTAAATCTTGTAAGATACTTAAGGTTGAGCCTTTCAATTCCGACAGGAAGAAGATGTCTGTGCTCATAGGTCTCCCCGATGGAGGGGTCCGAGCTTTCTGCAAAGGTGCATCAGAAATAGTGTTGAAAATGTGTGATAAAATAATTGATAGTAATGGAACAACGGTTGATCTTCCTGAAGAGAAGGCAAAGATTGTGAATGACATTATAGATGGATTTGCCAATGAAGCTTTGAGAACTCTTTGTTTGGCTGTCAAAGAGATAGATGAAACACAAAGCAAAACCAGCATCCCTGAAAATGGATACACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTGCGCCCTGGAGTTAAGGAAGCTGTTCAAAAATGTTTAGCAGCTGGAATAAGTGTCCGCATGGTCACCGGTGATAACATAAATACAGCTAAGGCTATAGCTAGAGAATGTGGTATACTTACTGAAGGTGGTGTAGCTATAGAAGGACCAGAATTTCGCAATTTGTCTCCAGAACAGATGAAGGATATCATACCAAGAATTCAGGTAATGGCACGATCGTTACCTCTTGACAAGCATACCTTGGTAACCCGTTTGAGGAATATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGACTTGCCATGGGAATTGCTGGAACCGAGGTTGCCAAAGAAAATGCTGACGTGATTATAATGGATGACAACTTCACTACTATTGTCAAAGTGGCCAAATGGGGACGCGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATGTTGTTGCTCTGATTACTAACTTTGTTTCTGCATGCATCACTGGAGCTGCTCCACTAACAGCTGTTCAATTGCTTTGGGTTAACTTGATTATGGACACTCTTGGTGCATTGGCACTGGCTACTGAACCTCCTAATGATGGACTTATGGAAAGGCAACCAGTTGGAAGGAAAGCAAGTTTTATTACCAAACCAATGTGGAGGAATATCTTTGGTCAAAGTTTGTATCAACTAATTATCCTTGGAGTTCTAAATTTTGAGGGGAAGAGGCTACTTGGACTAAGTGGCTCAGATGCAACTGCAGTACTCAACACTTTGATATTCAACTCCTTTGTATTTTGTCAGGTGTTCAATGAGATAAACAGCAGAGAAATTGAAAAGATAAACATATTCAAAGGCATGTTTGACAGCTGGATATTTTTAAGTGTTATTATCGCCACAGCGATATTTCAAGTAATCATAGTTGAGTTCCTAGGAGCATTTGCCAGCACAGTGCCTCTAACCTGGCAATTCTGGTTACTCAGTGTGTTATTTGGTTTACTTAGCATGCCTTTAGCTGCTATTCTCAAATGCATACCAGTTGGAAGTGATACCCCAAAGCAACATCATGATGGTTATGAGGCACTTCCTTCTGGTCCTGAAAGTGTGTGA 2982 0.4048 MVKIPFMMVMKIQKLAKGRIRTVINVQRAALHFTDAISTPEFKVSEKTAAAGFGIEPDDIASVVRSHDYKNYKNVGEVQGIISKLSVSVDEGVSQDSIDSRQEIYGLNRYTEKPSKSFLMFVWDALHDMTLIILIVCALVSIGIGLPTEGFPKGVYDGVGIILSIFLVVTVTAVSDYQQSLQFLDLDKEKKKISIHVTRDGKRQKVSIYDLVVGDIVHLSTGDQVPADGIFIQGYSLLIDESSLSGESEPVNIDSRRPFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFAVLTFLVLTIRFVVEKAVDGSFSSWSSEDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMTDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICEKTTEIKGDESTDKLKSEISDEVLSILLQAIFQNTSSEAVKDKDGKQTILGTPTESALLEFGLVSGGDFDEQRKSCKILKVEPFNSDRKKMSVLIGLPDGGVRAFCKGASEIVLKMCDKIIDSNGTTVDLPEEKAKIVNDIIDGFANEALRTLCLAVKEIDETQSKTSIPENGYTLIAIVGIKDPVRPGVKEAVQKCLAAGISVRMVTGDNINTAKAIARECGILTEGGVAIEGPEFRNLSPEQMKDIIPRIQVMARSLPLDKHTLVTRLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVKVAKWGRAIYINIQKFVQFQLTVNVVALITNFVSACITGAAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERQPVGRKASFITKPMWRNIFGQSLYQLIILGVLNFEGKRLLGLSGSDATAVLNTLIFNSFVFCQVFNEINSREIEKINIFKGMFDSWIFLSVIIATAIFQVIIVEFLGAFASTVPLTWQFWLLSVLFGLLSMPLAAILKCIPVGSDTPKQHHDGYEALPSGPESV 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02006 993 PRINTS P-type cation-transporting ATPase superfamily signature 409 423 - -
Trre1g02006 993 PRINTS P-type cation-transporting ATPase superfamily signature 240 254 - -
Trre1g02006 993 PRINTS P-type cation-transporting ATPase superfamily signature 710 729 - -
Trre1g02006 993 PRINTS P-type cation-transporting ATPase superfamily signature 734 746 - -
Trre1g02006 993 PRINTS P-type cation-transporting ATPase superfamily signature 607 618 - -
Trre1g02006 993 PRINTS P-type cation-transporting ATPase superfamily signature 629 639 - -
Trre1g02006 993 FunFam Calcium-transporting ATPase 607 755 - -
Trre1g02006 993 SFLD p-type atpase 391 763 IPR044492 -
Trre1g02006 993 SFLD C1.7: P-type atpase like 391 763 - -
Trre1g02006 993 SMART Cation_ATPase_N_a_2 74 146 IPR004014 -
Trre1g02006 993 Pfam E1-E2 ATPase 193 387 - -
Trre1g02006 993 Pfam Cation transport ATPase (P-type) 469 549 - -
Trre1g02006 993 CDD P-type_ATPase_Ca_PMCA-like 98 843 - -
Trre1g02006 993 ProSitePatterns E1-E2 ATPases phosphorylation site. 411 417 IPR018303 -
Trre1g02006 993 PANTHER CATION TRANSPORTING ATPASE 48 971 - -
Trre1g02006 993 NCBIfam calcium-translocating P-type ATPase, PMCA-type 67 971 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre1g02006 993 Pfam Cation transporting ATPase, C-terminus 795 968 IPR006068 -
Trre1g02006 993 Pfam Cation transporter/ATPase, N-terminus 77 141 IPR004014 -
Trre1g02006 993 SUPERFAMILY HAD-like 408 815 IPR036412 -
Trre1g02006 993 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 415 619 IPR023299 GO:0000166
Trre1g02006 993 FunFam Calcium-transporting ATPase 727 973 - -
Trre1g02006 993 SUPERFAMILY Calcium ATPase, transmembrane domain M 77 970 IPR023298 -
Trre1g02006 993 Gene3D - 419 614 IPR023299 GO:0000166
Trre1g02006 993 NCBIfam HAD-IC family P-type ATPase 161 432 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g02006 993 NCBIfam HAD-IC family P-type ATPase 675 798 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g02006 993 SUPERFAMILY Calcium ATPase, transduction domain A 194 290 IPR008250 -
Trre1g02006 993 FunFam Calcium-transporting ATPase 170 292 - -
Trre1g02006 993 Gene3D - 124 969 - -
Trre1g02006 993 Gene3D - 406 755 IPR023214 -
Trre1g02006 993 PRINTS H+-transporting ATPase (proton pump) signature 567 585 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g02006 993 PRINTS H+-transporting ATPase (proton pump) signature 710 726 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g02006 993 PRINTS H+-transporting ATPase (proton pump) signature 742 767 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g02006 993 FunFam Calcium-transporting ATPase 419 614 - -
Trre1g02006 993 Gene3D - 92 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02006 Trre-Chr1 15991139 15996963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02006 19 990 Primary Pumps ATPases AT3G57330 73.251 0.0 1482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02006 K01537 - gmx:100785768 1596.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02006 1 15991139 15996963 Trre1g02006 1 15991139 15996963 ECH