Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02005 ATGCCAAAACTTGTGGGGGCAGATGGGAGGATTCGCACTGTTATCAATGTTCAACGAGCAGCACTGCATTTTACGGATGCCATTAGTACACCTGAATTCAAGGTATCAGAAAAGACAGCAGCAGCTGGTTTTGGTATCGAACCAGATGATATTGCATCAGTTGTTCGAAGCCATGATTACAAGAACTATAAAAATGTTGGTGAAGTTCAAGGGATTATAAGTAAACTTTCAGTCTCAGTCGATGAAGGTGTCAGTCAAGACAGTATAGATAGTAGGCAAGAGATTTATGGACTCAACCGATATACCGAGAAGCCTTCTAAAAGCTTTCTGATGTTTGTTTGGGATGCACTGCATGACATGACCCTGATCATTCTAATTGTTTGTGCTTTAGTTTCCATAGGCATAGGGCTTCCCACTGAAGGGTTCCCAAAGGGGGTTTATGATGGTGTTGGAATCATACTTAGTATATTCTTGGTAGTCACTGTTACTGCTGTAAGTGACTACCAGCAATCTCTACAGTTCTTAGATTTGGACAAAGAGAAGAAAAAGATCTCTATTCATGTTACCAGGGATGGTAAAAGACAGAAGGTCTCAATTTACGACTTGGTAGTAGGAGATATAGTTCATTTGTCTACTGGTGATCAAGTTCCAGCTGATGGAATTTTTATACAAGGATATTCATTGTTAATCGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATATAGACAGTCGAAGACCTTTTCTTCTTTCAGGAACCAAAGTGCAAGACGGTCAGGGGAAGATGATAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTGATGGAAACTTTGAGTGAGGGAGGAGAGGATGAGACTCCACTTCAGGTGAAATTGAATGGAGTTGCTACAGTTATTGGTAAAATCGGTTTAACTTTTGCTGTTCTGACATTTTTGGTGTTGACAATACGGTTTGTGGTTGAAAAAGCAGTTGATGGAAGCTTCAGTAGTTGGTCTTCAGAGGATGCACTAAAGCTACTAGACTACTTTGCTATTGCTGTAACCATAATTGTTGTTGCGATTCCTGAAGGACTACCGTTAGCTGTAACACTCAGTCTTGCTTTTGCGATGAAAAAATTGATGACTGATAGGGCTCTTGTGAGACATCTTTCTGCTTGTGAGACTATGGGATCAGCTAGTTGCATTTGCACCGATAAGACAGGAACATTGACAACCAACCATATGGTGGTCGATAAAATTTGGATATGCGAAAAGACCACCGAGATAAAAGGTGATGAGAGTACTGATAAATTGAAATCAGAGATATCTGATGAAGTTCTAAGCATCCTTTTGCAGGCTATATTTCAGAATACTTCGTCGGAAGCAGTTAAAGACAAAGATGGAAAGCAGACAATATTGGGAACACCAACAGAATCTGCATTATTGGAATTTGGCTTGGTTTCAGGTGGTGATTTCGATGAACAGCGTAAATCTTGTAAGATACTTAAGGTTGAGCCTTTCAATTCCGACAGGAAGAAGATGTCTGTGCTCATAGGTCTCCCCGATGGAGGGGTCCGAGCTTTCTGCAAAGGTGCATCAGAAATAGTGTTGAAAATGTGTGATAAAATAATTGATAGTAATGGAACAACGGTTGATCTTCCTGAAGAGAAGGCAAAGATTGTGAATGACATTATAGATGGATTTGCCAATGAAGCTTTGAGAACTCTTTGTTTGGCTGTCAAAGAGATAGATGAAACACAAAGCAAAACCAGCATCCCTGAAAATGGATACACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTGCGCCCTGGAGTTAAGGAAGCTGTTCAAAAATGTTTAGCAGCTGGAATAAGTGTCCGCATGGTCACCGGTGATAACATAAATACAGCTAAGGCTATAGCTAGAGAATGTGGTATACTTACTGAAGGTGGTGTAGCTATAGAAGGACCAGAATTTCGCAATTTGTCTCCAGAACAGATGAAGGATATCATACCAAGAATTCAGGTAATGGCACGATCGTTACCTCTTGACAAGCATACCTTGGTAACCCGTTTGAGGAATATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGACTTGCCATGGGAATTGCTGGAACCGAGGTTGCCAAAGAAAATGCTGACGTGATTATAATGGATGACAACTTCACTACTATTGTCAAAGTGGCCAAATGGGGACGCGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATGTTGTTGCTCTGATTACTAACTTTGTTTCTGCATGCATCACTGGAGCTGCTCCACTAACAGCTGTTCAATTGCTTTGGGTTAACTTGATTATGGACACTCTTGGTGCATTGGCACTGGCTACTGAACCTCCTAATGATGGACTTATGGAAAGGCAACCAGTTGGAAGGAAAGCAAGTTTTATTACCAAACCAATGTGGAGGAATATCTTTGGTCAAAGTTTGTATCAACTAATTATCCTTGGAGTTCTAAATTTTGAGGGGAAGAGGCTACTTGGACTAAGTGGCTCAGATGCAACTGCAGTACTCAACACTTTGATATTCAACTCCTTTGTATTTTGTCAGGTGTTCAATGAGATAAACAGCAGAGAAATTGAAAAGATAAACATATTCAAAGGCATGTTTGACAGCTGGATATTTTTAAGTGTTATTATCGCCACAGCGATATTTCAAGTAATCATAGTTGAGTTCCTAGGAGCATTTGCCAGCACAGTGCCTCTAACCTGGCAATTCTGGTTACTCAGTGTGTTATTTGGTTTACTTAGCATGCCTTTAGCTGCTATTCTCAAATGCATACCAGTTGGAAGTGATACCCCAAAGCAACATCATGATGGTTATGAGGCACTTCCTTCTGGTCCTGAAAGTGTGTGA 2955 0.4068 MPKLVGADGRIRTVINVQRAALHFTDAISTPEFKVSEKTAAAGFGIEPDDIASVVRSHDYKNYKNVGEVQGIISKLSVSVDEGVSQDSIDSRQEIYGLNRYTEKPSKSFLMFVWDALHDMTLIILIVCALVSIGIGLPTEGFPKGVYDGVGIILSIFLVVTVTAVSDYQQSLQFLDLDKEKKKISIHVTRDGKRQKVSIYDLVVGDIVHLSTGDQVPADGIFIQGYSLLIDESSLSGESEPVNIDSRRPFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFAVLTFLVLTIRFVVEKAVDGSFSSWSSEDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMTDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICEKTTEIKGDESTDKLKSEISDEVLSILLQAIFQNTSSEAVKDKDGKQTILGTPTESALLEFGLVSGGDFDEQRKSCKILKVEPFNSDRKKMSVLIGLPDGGVRAFCKGASEIVLKMCDKIIDSNGTTVDLPEEKAKIVNDIIDGFANEALRTLCLAVKEIDETQSKTSIPENGYTLIAIVGIKDPVRPGVKEAVQKCLAAGISVRMVTGDNINTAKAIARECGILTEGGVAIEGPEFRNLSPEQMKDIIPRIQVMARSLPLDKHTLVTRLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVKVAKWGRAIYINIQKFVQFQLTVNVVALITNFVSACITGAAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERQPVGRKASFITKPMWRNIFGQSLYQLIILGVLNFEGKRLLGLSGSDATAVLNTLIFNSFVFCQVFNEINSREIEKINIFKGMFDSWIFLSVIIATAIFQVIIVEFLGAFASTVPLTWQFWLLSVLFGLLSMPLAAILKCIPVGSDTPKQHHDGYEALPSGPESV 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02005 984 SUPERFAMILY Calcium ATPase, transduction domain A 185 281 IPR008250 -
Trre1g02005 984 PRINTS P-type cation-transporting ATPase superfamily signature 598 609 - -
Trre1g02005 984 PRINTS P-type cation-transporting ATPase superfamily signature 231 245 - -
Trre1g02005 984 PRINTS P-type cation-transporting ATPase superfamily signature 400 414 - -
Trre1g02005 984 PRINTS P-type cation-transporting ATPase superfamily signature 701 720 - -
Trre1g02005 984 PRINTS P-type cation-transporting ATPase superfamily signature 725 737 - -
Trre1g02005 984 PRINTS P-type cation-transporting ATPase superfamily signature 620 630 - -
Trre1g02005 984 Pfam Cation transporting ATPase, C-terminus 786 959 IPR006068 -
Trre1g02005 984 SMART Cation_ATPase_N_a_2 65 137 IPR004014 -
Trre1g02005 984 PRINTS H+-transporting ATPase (proton pump) signature 733 758 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g02005 984 PRINTS H+-transporting ATPase (proton pump) signature 701 717 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g02005 984 PRINTS H+-transporting ATPase (proton pump) signature 558 576 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g02005 984 Pfam Cation transport ATPase (P-type) 460 540 - -
Trre1g02005 984 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 406 610 IPR023299 GO:0000166
Trre1g02005 984 SUPERFAMILY HAD-like 399 806 IPR036412 -
Trre1g02005 984 NCBIfam calcium-translocating P-type ATPase, PMCA-type 58 962 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre1g02005 984 FunFam Calcium-transporting ATPase 161 283 - -
Trre1g02005 984 NCBIfam HAD-IC family P-type ATPase 152 423 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g02005 984 NCBIfam HAD-IC family P-type ATPase 666 789 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g02005 984 FunFam Calcium-transporting ATPase 598 746 - -
Trre1g02005 984 Pfam E1-E2 ATPase 184 378 - -
Trre1g02005 984 SUPERFAMILY Calcium ATPase, transmembrane domain M 68 961 IPR023298 -
Trre1g02005 984 ProSitePatterns E1-E2 ATPases phosphorylation site. 402 408 IPR018303 -
Trre1g02005 984 SFLD p-type atpase 382 754 IPR044492 -
Trre1g02005 984 FunFam Calcium-transporting ATPase 410 605 - -
Trre1g02005 984 PANTHER CATION TRANSPORTING ATPASE 39 962 - -
Trre1g02005 984 Gene3D - 83 283 - -
Trre1g02005 984 SFLD C1.7: P-type atpase like 382 754 - -
Trre1g02005 984 Gene3D - 115 960 - -
Trre1g02005 984 Gene3D - 397 746 IPR023214 -
Trre1g02005 984 FunFam Calcium-transporting ATPase 718 964 - -
Trre1g02005 984 Pfam Cation transporter/ATPase, N-terminus 68 132 IPR004014 -
Trre1g02005 984 CDD P-type_ATPase_Ca_PMCA-like 89 834 - -
Trre1g02005 984 Gene3D - 410 605 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02005 Trre-Chr1 15991139 15997000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02005 8 981 Primary Pumps ATPases AT3G57330 73.203 0.0 1483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02005 K01537 - gmx:100785768 1596.25