Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02003 ATGAGGAAGAAAAGTATTCCATCCTGTTCTTTTCGTAATCCATGTTCTTCTTTACATGGTTTAACAAGAATGTTTAAATGTGATTTGTGTGGCAAAAGCTTCAGCTCCGGCAATGCACTCGGTGGCCACAAAACTTCTCACCGTTCGCAAAACCTTCTTCGGTCTTTATGTTCTTCTCCTTGTCGTCACCATGGTGAGAAACAGAAACATTGTTGTCATGTTTGCAGGAAGGTTTTTCCATCCGACAAGGCTTTGTATGGACACATGAGATCACACAAAAGAGATGGAAAGAATGTTATTCATCCACCACCAACTACATCCTCCTTAGAGGACGTTGAAGATCAATTTCTACTTGGGGAAATATGTTAA 369 0.4038 MRKKSIPSCSFRNPCSSLHGLTRMFKCDLCGKSFSSGNALGGHKTSHRSQNLLRSLCSSPCRHHGEKQKHCCHVCRKVFPSDKALYGHMRSHKRDGKNVIHPPPTTSSLEDVEDQFLLGEIC 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02003 122 SMART c2h2final6 25 47 IPR013087 -
Trre1g02003 122 SMART c2h2final6 70 92 IPR013087 -
Trre1g02003 122 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Trre1g02003 122 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 20 99 IPR044653 GO:0003700
Trre1g02003 122 ProSitePatterns Zinc finger C2H2 type domain signature. 71 92 IPR013087 -
Trre1g02003 122 SUPERFAMILY beta-beta-alpha zinc fingers 67 95 IPR036236 -
Trre1g02003 122 SUPERFAMILY beta-beta-alpha zinc fingers 23 51 IPR036236 -
Trre1g02003 122 Pfam C2H2-type zinc finger 70 94 - -
Trre1g02003 122 Pfam C2H2-type zinc finger 25 50 - -
Trre1g02003 122 Gene3D Classic Zinc Finger 23 92 - -
Trre1g02003 122 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Trre1g02003 122 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02003 Trre-Chr1 15981512 15981880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02003 25 113 C2H2 Transcription Factor Family AT1G27730 37.624 1.60e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02003 zf-C2H2_6 1.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02003 - - tpra:123891323 135.961