Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01999 ATGGATTACACTAACAATTCCAATCACTCCCTTTCCTACTCCACTCTCTTCAATCTTCAGTCTTTGGTGAATTTTCAACTTCCACAACAAGATGATGAATTTGATTATTACGGGAATAGTAGTCAGGATGAAGAAGAAAGCAGAGATAGTCGTCGAGGTGGTGGGGGAGCAATTGGAAATCACAGTAACGGGAATGTGCATTCAAAGGATGTGAATTTTTCGAAAAAGAAAAGGGTGCGATCTCAAAACAGTGATGACGAGGACAGAGGAAGTTTTTACGGGGCATACATGACAGAGGAGAAATACCGCTCAATGTTGGGTGACCATGTTCAGAAATACAAGAGGAGGTCTAAGGATATTGCTTCTAGTCATGCACAAAATCGGGGTGCTGTCCCGCTTGTCAAAAGTAATAATAATGGATTAAAAGCTCAAAAGCTAGGGAATGATAACCGGGGAGGATTGCATGCTGCTGAGACTTTATCTGAATGGTTATATAATTCCAATTCTCAGAAACTAGAAAACTACCATAATGCAGATTTAGTGCAGAGAAGAAATGGCGCTGATAGGGTTATGTATGAACCTTCTATTTTAGAAATTGGGGATGGTATCACTTACAAGATTCCTCCAATTTATGACAAGCTGGCTACAACGCTGAACCTTCCAAGCTTCTCAGATATCCATGTGGATGAATTTTACTTGAAGGGTACCTTGGATTTGGGGTCTTTGGCTGCAATGATGGCTGCTGACAAAAGGTTAGGAAATAAAATCCGAGCAGGCATGGGGGAACCCCTATTTCAATATCAATCACTTCAGGAGCGAATAAAGGCCATGTCAGCTTCTAATTCACCTCAAAAATTTAGTTTGAATGTGTCTGATATTGGTTTGAATTCATCCATTCCGGAGGGGGCTGCTGGAAACATAAAGCGGTCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTAAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCCTACCCAAGAAGCAAAAGGTAAAGAAAGATCCTGCTTCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATTTGGGTTAGATTGAAAATTAGTAGATCACTTAAATGGAATAGGAGTGCTAACATTCGCACCCGGAAACTATCTAGAGACATGTTGCTATTCTGGAAACGAATCGATAAGGAGATGGCCGAAGTGAGGAAAAGAGAAGAGAAAGAAGCTGCTGAAGCTTTAAGACGTGAACAGGAGCTCCGAGAGGCAAAGAGACAGCAGCAAAGGCTTAATTTTCTGATACAACAAACTGAGCTCTACAGTCACTTTATGCAGAACAAGTCAGATTTACTATCTTCGGAAGCTTTACCCATGGCAGAGGAAAAAACAAATGATCAAGATGCACCGTTCATCTCATCAGATGCTGGGCCTAACGAGGAAGAAGATCCAGAAGAGGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTTTAAGCAGAAAACGTTGACTAATGCTTTTGACAGTGAATGTTTGAGGCTGCGGCAGGTGGGTGAAGCTGACCCACTTATGCAGGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGCATCCACAGTTCAAACACCTGAATTATTTAAAGGTTGTCTAAAAGAATACCAGCTGAAAGGTCTCCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAAGCTATGGTTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTTAAAAGACTTCCGTACTGGGGAGGGCTTTCAGAGAGGACAGTACTAAGGAAAAGTATTAACCCAAAGGACCTTTATCGTAGGGAAGCTAAATTTCACGTTCTCATCACAAGCTATCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTACATGGTTTTAGACGAAGCCCAGGCAATTAAAAGTGCAAACAGTATAAGATGGAAGACACTTCTCAGCTTTAATTGCCGGAATCGTCTACTGCTGACTGGTACACCCATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATCATGCCAACTTTATTCGACAGCCATGAGCAGTTTAACGAGTGGTTCTCAAAAGGAATTGAGAACCATGCAGAACACGGGGGTACTTTGAATGAGCACCAGCTTAATAGATTGCATTCAATTCTAAAACCTTTCATGCTACGGCGTGTTAAAAAAGACGTAGTTTCTGAGTTGACACAAAAAACCGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTTTACCAAGCAATTAAGAACAAGATATCTCTGGCTGAACTATTTGATAGTAGTCGTGGGCAGCTTAACGAGAAGAAAATTCTAAATTTGATGAATATCGTTATTCAACTAAGGAAGGTTTGCAACCATCCTGAGTTGTTCGAAAGGAATGAAGGAAGCACATATTTTTACTTTGGTGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGTGAGTTGGAGGATGTTTACTATGCTGGAGGTCTCAACCCCATATCTTTTAAGATACCAAAGCTTGTCTATCAGGATATTATGCAAAGCTCTGAGACTCTCAGTTCAGCTGTTGGTCATGGTGTCTCTAGAGAAATTTTTCAGAAACATTTTAATATTTTTGAACCAGAAAATGTCCATCGATCTATTTTCTCAGAAGAAACAAATGTTGAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCAAGAGGTGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGACTATTATTTTCTATGATGAGATGGGAACAAAATGTCTTTGACGAAGTTGGAGACTTTCTTACAGAATACATTGTAGATGATCCTGAATGTAATTTCCTCGAAAAAGGTAAAGTGAGAGCTGTTACAAGAATGTTATTGCTACCATCCAGATCTGAGACCAAGTTTCTTCAAAAAAGGTTTGCAACTGGGCCCTCCCATGCCCCTTTTGAGGGCTTGGTAGTCTCGCATCAGGATAGGCTTTTATCTAACGCAAGGCTTCTTCACTCAGCATACACATACATCCCACCAACAAGAGCTCCCCCTATTGATGCTCATTGCTCTGATAGAAACTTCTCCTATAAAAAGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTTTTTGTTGGATTTGCGCGTACATCTGAATGTAATGGGCCTAGAAAGCCCAATCACCATCATCCTCATTATTTAATTCAAGAGATCGATTCTGAATTACCTGTTTCACAGCCTGCGCTGCAGTTAACTCACAGTATTTTTGGCTCCACACCACCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAACTTCAAACTCTTGATATATTACTGAAACGCTTACGCGCAGGAAATCATCGTATTCTTTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATACAAGTATTTTAGACTTGATGGGTCATCTACAATTCAGGATCGCAGAGACATGGTCAAAGACTTCCAACAAAGGAGTGATATTTTTGTGTTCTTGCTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCGACATTGGATCTTCAAGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACGGTTTATCGACTTATATGTAAAGAGACTGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGTACCGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGCGGTGACCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTTTGGATGATGTCCAATTGCAACAAAAATTTAAGGAAATCCCTCTCCAGGTAAAGGATAGGCAAAAGAGAAAACAATCTATGAAGGGCATTCGAGTAAGCGAAGATGGTGATGCATCTCTGGAAGATTTGACAAACTCTGTAGCTCAGACTATTGCAGATAATGATGCTTTCGTGGAGCCGGAGGGGACAAAGTCCAGTAATAAAAAGAGAAAAGCAACTTCAGACAAGCAAACTTCAAGATCAAAGAATTCTAAAAAGATGAGTGAACTTGGCAATATGCCTGTAGATGAACCGGATGATGCCCATCTAAATAATGATTCAGCGGGCCAGAAACCAAAGAGACCAAAGCGGACAAAGAAGAATGTAAATGAAAAGCTTGAAGAAGTTTATACTGGGACAGCCACCATTTTACCAGAGCAGACCCAATTTCCTCCTTCACATGATTTCAGTTTTGGAGGTTCTAAAGCAGAGACAGTTCAAGACTCATGA 4524 0.4098 MDYTNNSNHSLSYSTLFNLQSLVNFQLPQQDDEFDYYGNSSQDEEESRDSRRGGGGAIGNHSNGNVHSKDVNFSKKKRVRSQNSDDEDRGSFYGAYMTEEKYRSMLGDHVQKYKRRSKDIASSHAQNRGAVPLVKSNNNGLKAQKLGNDNRGGLHAAETLSEWLYNSNSQKLENYHNADLVQRRNGADRVMYEPSILEIGDGITYKIPPIYDKLATTLNLPSFSDIHVDEFYLKGTLDLGSLAAMMAADKRLGNKIRAGMGEPLFQYQSLQERIKAMSASNSPQKFSLNVSDIGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPASIEKEEMDRIGKIWVRLKISRSLKWNRSANIRTRKLSRDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSDLLSSEALPMAEEKTNDQDAPFISSDAGPNEEEDPEEAELKKEALKAAQEAVFKQKTLTNAFDSECLRLRQVGEADPLMQEVAGASNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHVLITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTQKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSSRGQLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNSLPPPPFGELEDVYYAGGLNPISFKIPKLVYQDIMQSSETLSSAVGHGVSREIFQKHFNIFEPENVHRSIFSEETNVESGNFGFTHLMDLSPQEVAFLATGSFMERLLFSMMRWEQNVFDEVGDFLTEYIVDDPECNFLEKGKVRAVTRMLLLPSRSETKFLQKRFATGPSHAPFEGLVVSHQDRLLSNARLLHSAYTYIPPTRAPPIDAHCSDRNFSYKKIEELHDPWVKRFFVGFARTSECNGPRKPNHHHPHYLIQEIDSELPVSQPALQLTHSIFGSTPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRILLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKEIPLQVKDRQKRKQSMKGIRVSEDGDASLEDLTNSVAQTIADNDAFVEPEGTKSSNKKRKATSDKQTSRSKNSKKMSELGNMPVDEPDDAHLNNDSAGQKPKRPKRTKKNVNEKLEEVYTGTATILPEQTQFPPSHDFSFGGSKAETVQDS 1507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01999 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 792 1361 IPR027417 -
Trre1g01999 1507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1182 1366 IPR001650 -
Trre1g01999 1507 PANTHER HELICASE SRCAP-RELATED 369 500 - -
Trre1g01999 1507 CDD SF2_C_SNF 1170 1302 - -
Trre1g01999 1507 MobiDBLite consensus disorder prediction 1483 1507 - -
Trre1g01999 1507 Gene3D - 800 869 IPR027417 -
Trre1g01999 1507 Pfam Helicase conserved C-terminal domain 1182 1291 IPR001650 -
Trre1g01999 1507 MobiDBLite consensus disorder prediction 1437 1457 - -
Trre1g01999 1507 ProSiteProfiles DBINO domain profile. 327 452 IPR020838 GO:0003677
Trre1g01999 1507 MobiDBLite consensus disorder prediction 1407 1428 - -
Trre1g01999 1507 MobiDBLite consensus disorder prediction 1396 1471 - -
Trre1g01999 1507 Gene3D - 1148 1387 IPR027417 -
Trre1g01999 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 790 IPR027417 -
Trre1g01999 1507 Pfam DNA-binding domain 333 450 IPR020838 GO:0003677
Trre1g01999 1507 MobiDBLite consensus disorder prediction 70 87 - -
Trre1g01999 1507 MobiDBLite consensus disorder prediction 118 140 - -
Trre1g01999 1507 SMART ultradead3 558 753 IPR014001 -
Trre1g01999 1507 MobiDBLite consensus disorder prediction 1363 1382 - -
Trre1g01999 1507 MobiDBLite consensus disorder prediction 461 488 - -
Trre1g01999 1507 SMART helicmild6 1208 1291 IPR001650 -
Trre1g01999 1507 Pfam SNF2-related domain 577 864 IPR000330 GO:0005524|GO:0140658
Trre1g01999 1507 Gene3D - 557 799 IPR038718 -
Trre1g01999 1507 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 574 745 IPR014001 -
Trre1g01999 1507 FunFam DNA helicase INO80-like protein 1150 1402 - -
Trre1g01999 1507 FunFam Putative DNA helicase INO80 534 812 - -
Trre1g01999 1507 MobiDBLite consensus disorder prediction 33 92 - -
Trre1g01999 1507 Coils Coil 399 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01999 Trre-Chr1 15937187 15954654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01999 583 864 RAD5 or RAD16-like Gene Family AT5G43530 29.730 4.07e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre1g01999 SNF2_N 9.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01999 K11665 - gmx:100780615 2350.86