Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01998 ATGGATTACACTAACAATTCCAATCACTCCCTTTCCTACTCCACTCTCTTCAATCTTCAGTCTTTGGTGAATTTTCAACTTCCACAACAAGATGATGAATTTGATTATTACGGGAATAGTAGTCAGGATGAAGAAGAAAGCAGAGATAGTCGTCGAGGTGGTGGGGGAGCAATTGGAAATCACAGTAACGGGAATGTGCATTCAAAGGATGTGAATTTTTCGAAAAAGAAAAGGGTGCGATCTCAAAACAGTGATGACGAGGACAGAGGAAGTTTTTACGGGGCATACATGACAGAGGAGAAATACCGCTCAATGTTGGGTGACCATGTTCAGAAATACAAGAGGAGGTCTAAGGATATTGCTTCTAGTCATGCACAAAATCGGGGTGCTGTCCCGCTTGTCAAAAGTAATAATAATGGATTAAAAGCTCAAAAGCTAGGGAATGATAACCGGGGAGGATTGCATGCTGCTGAGACTTTATCTGAATGGTTATATAATTCCAATTCTCAGAAACTAGAAAACTACCATAATGCAGATTTAGTGCAGAGAAGAAATGGCGCTGATAGGGTTATGTATGAACCTTCTATTTTAGAAATTGGGGATGGTATCACTTACAAGATTCCTCCAATTTATGACAAGCTGGCTACAACGCTGAACCTTCCAAGCTTCTCAGATATCCATGTGGATGAATTTTACTTGAAGGGTACCTTGGATTTGGGGTCTTTGGCTGCAATGATGGCTGCTGACAAAAGGTTAGGAAATAAAATCCGAGCAGGCATGGGGGAACCCCTATTTCAATATCAATCACTTCAGGAGCGAATAAAGGCCATGTCAGCTTCTAATTCACCTCAAAAATTTAGTTTGAATGTGTCTGATATTGGTTTGAATTCATCCATTCCGGAGGGGGCTGCTGGAAACATAAAGCGGTCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTAAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCCTACCCAAGAAGCAAAAGGTAAAGAAAGATCCTGCTTCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATTTGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTACTCTTCATCGAAAGCAACTCATTGATGCCAAGAGGTGCTCAGAATACTGTCAAAGAGAGGTTAGATTGAAAATTAGTAGATCACTTAAATGGAATAGGAGTGCTAACATTCGCACCCGGAAACTATCTAGAGACATGTTGCTATTCTGGAAACGAATCGATAAGGAGATGGCCGAAGTGAGGAAAAGAGAAGAGAAAGAAGCTGCTGAAGCTTTAAGACGTGAACAGGAGCTCCGAGAGGCAAAGAGACAGCAGCAAAGGCTTAATTTTCTGATACAACAAACTGAGCTCTACAGTCACTTTATGCAGAACAAGTCAGATTTACTATCTTCGGAAGCTTTACCCATGGCAGAGGAAAAAACAAATGATCAAGATGCACCGTTCATCTCATCAGATGCTGGGCCTAACGAGGAAGAAGATCCAGAAGAGGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTTTAAGCAGAAAACGTTGACTAATGCTTTTGACAGTGAATGTTTGAGGCTGCGGCAGGTGGGTGAAGCTGACCCACTTATGCAGGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGCATCCACAGTTCAAACACCTGAATTATTTAAAGGTTGTCTAAAAGAATACCAGCTGAAAGGTCTCCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAAGCTATGGTTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTTAAAAGACTTCCGTACTGGGGAGGGCTTTCAGAGAGGACAGTACTAAGGAAAAGTATTAACCCAAAGGACCTTTATCGTAGGGAAGCTAAATTTCACGTTCTCATCACAAGCTATCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTACATGGTTTTAGACGAAGCCCAGGCAATTAAAAGTGCAAACAGTATAAGATGGAAGACACTTCTCAGCTTTAATTGCCGGAATCGTCTACTGCTGACTGGTACACCCATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATCATGCCAACTTTATTCGACAGCCATGAGCAGTTTAACGAGTGGTTCTCAAAAGGAATTGAGAACCATGCAGAACACGGGGGTACTTTGAATGAGCACCAGCTTAATAGATTGCATTCAATTCTAAAACCTTTCATGCTACGGCGTGTTAAAAAAGACGTAGTTTCTGAGTTGACACAAAAAACCGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTTTACCAAGCAATTAAGAACAAGATATCTCTGGCTGAACTATTTGATAGTAGTCGTGGGCAGCTTAACGAGAAGAAAATTCTAAATTTGATGAATATCGTTATTCAACTAAGGAAGGTTTGCAACCATCCTGAGTTGTTCGAAAGGAATGAAGGAAGCACATATTTTTACTTTGGTGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGTGAGTTGGAGGATGTTTACTATGCTGGAGGTCTCAACCCCATATCTTTTAAGATACCAAAGCTTGTCTATCAGGATATTATGCAAAGCTCTGAGACTCTCAGTTCAGCTGTTGGTCATGGTGTCTCTAGAGAAATTTTTCAGAAACATTTTAATATTTTTGAACCAGAAAATGTCCATCGATCTATTTTCTCAGAAGAAACAAATGTTGAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCAAGAGGTGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGACTATTATTTTCTATGATGAGATGGGAACAAAATGTCTTTGACGAAGTTGGAGACTTTCTTACAGAATACATTGTAGATGATCCTGAATGTAATTTCCTCGAAAAAGGTAAAGTGAGAGCTGTTACAAGAATGTTATTGCTACCATCCAGATCTGAGACCAAGTTTCTTCAAAAAAGGTTTGCAACTGGGCCCTCCCATGCCCCTTTTGAGGGCTTGGTAGTCTCGCATCAGGATAGGCTTTTATCTAACGCAAGGCTTCTTCACTCAGCATACACATACATCCCACCAACAAGAGCTCCCCCTATTGATGCTCATTGCTCTGATAGAAACTTCTCCTATAAAAAGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTTTTTGTTGGATTTGCGCGTACATCTGAATGTAATGGGCCTAGAAAGCCCAATCACCATCATCCTCATTATTTAATTCAAGAGATCGATTCTGAATTACCTGTTTCACAGCCTGCGCTGCAGTTAACTCACAGTATTTTTGGCTCCACACCACCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAACTTCAAACTCTTGATATATTACTGAAACGCTTACGCGCAGGAAATCATCGTATTCTTTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATACAAGTATTTTAGACTTGATGGGTCATCTACAATTCAGGATCGCAGAGACATGGTCAAAGACTTCCAACAAAGGAGTGATATTTTTGTGTTCTTGCTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCGACATTGGATCTTCAAGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACGGTTTATCGACTTATATGTAAAGAGACTGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGTACCGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGCGGTGACCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTTTGGATGATGTCCAATTGCAACAAAAATTTAAGGAAATCCCTCTCCAGGTAAAGGATAGGCAAAAGAGAAAACAATCTATGAAGGGCATTCGAGTAAGCGAAGATGGTGATGCATCTCTGGAAGATTTGACAAACTCTGTAGCTCAGACTATTGCAGATAATGATGCTTTCGTGGAGCCGGAGGGGACAAAGTCCAGTAATAAAAAGAGAAAAGCAACTTCAGACAAGCAAACTTCAAGATCAAAGAATTCTAAAAAGATGAGTGAACTTGGCAATATGCCTGTAGATGAACCGGATGATGCCCATCTAAATAATGATTCAGCGGGCCAGAAACCAAAGAGACCAAAGCGGACAAAGAAGAATGTAAATGAAAAGCTTGAAGAAGTTTATACTGGGACAGCCACCATTTTACCAGAGCAGACCCAATTTCCTCCTTCACATGATTTCAGTTTTGGAGGTTCTAAAGCAGAGACAGTTCAAGACTCATGA 4632 0.4091 MDYTNNSNHSLSYSTLFNLQSLVNFQLPQQDDEFDYYGNSSQDEEESRDSRRGGGGAIGNHSNGNVHSKDVNFSKKKRVRSQNSDDEDRGSFYGAYMTEEKYRSMLGDHVQKYKRRSKDIASSHAQNRGAVPLVKSNNNGLKAQKLGNDNRGGLHAAETLSEWLYNSNSQKLENYHNADLVQRRNGADRVMYEPSILEIGDGITYKIPPIYDKLATTLNLPSFSDIHVDEFYLKGTLDLGSLAAMMAADKRLGNKIRAGMGEPLFQYQSLQERIKAMSASNSPQKFSLNVSDIGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPASIEKEEMDRIGKIWVNIVRRDIPKHHRNFTTLHRKQLIDAKRCSEYCQREVRLKISRSLKWNRSANIRTRKLSRDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSDLLSSEALPMAEEKTNDQDAPFISSDAGPNEEEDPEEAELKKEALKAAQEAVFKQKTLTNAFDSECLRLRQVGEADPLMQEVAGASNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHVLITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTQKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSSRGQLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNSLPPPPFGELEDVYYAGGLNPISFKIPKLVYQDIMQSSETLSSAVGHGVSREIFQKHFNIFEPENVHRSIFSEETNVESGNFGFTHLMDLSPQEVAFLATGSFMERLLFSMMRWEQNVFDEVGDFLTEYIVDDPECNFLEKGKVRAVTRMLLLPSRSETKFLQKRFATGPSHAPFEGLVVSHQDRLLSNARLLHSAYTYIPPTRAPPIDAHCSDRNFSYKKIEELHDPWVKRFFVGFARTSECNGPRKPNHHHPHYLIQEIDSELPVSQPALQLTHSIFGSTPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRILLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKEIPLQVKDRQKRKQSMKGIRVSEDGDASLEDLTNSVAQTIADNDAFVEPEGTKSSNKKRKATSDKQTSRSKNSKKMSELGNMPVDEPDDAHLNNDSAGQKPKRPKRTKKNVNEKLEEVYTGTATILPEQTQFPPSHDFSFGGSKAETVQDS 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01998 1543 ProSiteProfiles DBINO domain profile. 363 488 IPR020838 GO:0003677
Trre1g01998 1543 MobiDBLite consensus disorder prediction 497 524 - -
Trre1g01998 1543 MobiDBLite consensus disorder prediction 1432 1507 - -
Trre1g01998 1543 Gene3D - 1184 1423 IPR027417 -
Trre1g01998 1543 SMART ultradead3 594 789 IPR014001 -
Trre1g01998 1543 SMART helicmild6 1244 1327 IPR001650 -
Trre1g01998 1543 Coils Coil 435 474 - -
Trre1g01998 1543 FunFam Putative DNA helicase INO80 570 848 - -
Trre1g01998 1543 Pfam DNA-binding domain 359 486 IPR020838 GO:0003677
Trre1g01998 1543 PANTHER HELICASE SRCAP-RELATED 40 536 - -
Trre1g01998 1543 Gene3D - 836 905 IPR027417 -
Trre1g01998 1543 FunFam DNA helicase INO80-like protein 1186 1438 - -
Trre1g01998 1543 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 610 781 IPR014001 -
Trre1g01998 1543 CDD SF2_C_SNF 1206 1338 - -
Trre1g01998 1543 MobiDBLite consensus disorder prediction 70 87 - -
Trre1g01998 1543 MobiDBLite consensus disorder prediction 118 140 - -
Trre1g01998 1543 MobiDBLite consensus disorder prediction 1519 1543 - -
Trre1g01998 1543 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1218 1402 IPR001650 -
Trre1g01998 1543 MobiDBLite consensus disorder prediction 1473 1493 - -
Trre1g01998 1543 MobiDBLite consensus disorder prediction 1399 1418 - -
Trre1g01998 1543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 1397 IPR027417 -
Trre1g01998 1543 Gene3D - 593 835 IPR038718 -
Trre1g01998 1543 Pfam Helicase conserved C-terminal domain 1218 1327 IPR001650 -
Trre1g01998 1543 MobiDBLite consensus disorder prediction 1443 1464 - -
Trre1g01998 1543 MobiDBLite consensus disorder prediction 33 92 - -
Trre1g01998 1543 Pfam SNF2-related domain 613 900 IPR000330 GO:0005524|GO:0140658
Trre1g01998 1543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 826 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01998 Trre-Chr1 15937187 15954654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01998 619 900 RAD5 or RAD16-like Gene Family AT5G43530 29.730 4.78e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre1g01998 SNF2_N 1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01998 K11665 - gmx:100780615 2432.14