Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01997 ATGGAGAAAGATAACGACTATACGACCCCAAGTTTCAACACACTTGACTACACACAAGATCATCATCATAACCAACAACAATATGAACAACTTATGAAGTATCGAATTGGCGAAACTTTGGGCGAAAACAACGGGATGGTGGTGGATAATTACATGCCTCAAACACAAACTTCTGGAGGATTTTATGGTGCAAATAGTTCTTTTGATAAAATGAGTTTTGCAGATGTGATGCAATTTGCAGCCTTAAACCGGGAAGAATCTGATCCGGTATATTTCATGAAGTTTCCTGTCTTAAATAACAAGATGGAAAATCAAAACTTGATGTTGAGTGGTGGTGATGGGATAGGAGAAAATGAATCAAGAGATGATCATCAACAAGATCAGTACGAAGAAATTAATCGAGTTTCTGAGGAGAATAACAACGTCTCGGTGCAAGTAGTACAAGAGAATAATAGTAAGAAGAGGAAGAGACCAAGAAGTGTTAAGACAAGTGAAGAAGTTGAGAGTCAAAGAATGACTCACATCGCAGTTGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGTGTTCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAGTTTGTGAGAGAATTGGAACAACTTCTTCAATGTTTAGAATCACAAAAGAGAAGGAGATTACTAGGAGAAGCACAATCAAAACAAGCTGAAGATTCAACACCATTTTTTCCACCTACTAATTTGGCAACAAATGAACAAATGAAGCTAGTTGAGATAGAAACTGGACTTCAAGAAGAAACAGCTGAGAGTAAGTCATGTTTGGCTGATGTTGAAGTGAAACTTCTTGGATTTGATGCAATGATTAAAATCCTATCAAAGAGAAGGCAAGGACAGTTGATTAAGATCATTGCTGCCCTTGAAGATATGCAGCTTATTATTCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTAGCTAGTGATACAAGATTCACAGCAGAAGATATAGCAAGCTCCGTTCAGCAGATACTAAGTTTTATTCATGCAAACACCAGCATGTGA 1110 0.3793 MEKDNDYTTPSFNTLDYTQDHHHNQQQYEQLMKYRIGETLGENNGMVVDNYMPQTQTSGGFYGANSSFDKMSFADVMQFAALNREESDPVYFMKFPVLNNKMENQNLMLSGGDGIGENESRDDHQQDQYEEINRVSEENNNVSVQVVQENNSKKRKRPRSVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSKQAEDSTPFFPPTNLATNEQMKLVEIETGLQEETAESKSCLADVEVKLLGFDAMIKILSKRRQGQLIKIIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIASSVQQILSFIHANTSM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01997 369 CDD bHLH_AtFAMA_like 172 239 - -
Trre1g01997 369 PANTHER TRANSCRIPTION FACTOR FAMA 88 360 IPR044283 GO:0003700|GO:0010052
Trre1g01997 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 220 IPR011598 GO:0046983
Trre1g01997 369 Pfam Helix-loop-helix DNA-binding domain 170 221 IPR011598 GO:0046983
Trre1g01997 369 SMART finulus 175 226 IPR011598 GO:0046983
Trre1g01997 369 MobiDBLite consensus disorder prediction 150 172 - -
Trre1g01997 369 Gene3D - 160 235 IPR036638 GO:0046983
Trre1g01997 369 MobiDBLite consensus disorder prediction 7 21 - -
Trre1g01997 369 FunFam Basic helix-loop-helix transcription factor 160 235 - -
Trre1g01997 369 MobiDBLite consensus disorder prediction 135 149 - -
Trre1g01997 369 MobiDBLite consensus disorder prediction 134 172 - -
Trre1g01997 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 235 IPR036638 GO:0046983
Trre1g01997 369 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01997 Trre-Chr1 15923026 15924876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01997 4 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 55.283 1.43e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g01997 HLH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01997 K26213 - gmx:100813515 456.832