Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01970 ATGATGGAGAAAACTAGCATGGACAAAATCAAGTTTGATTCTTTGCATGAAATTCTACCTGGAAGAGAATCATGGCGCATTAAGGTTCGTGTGCTTAGGATGTGGAAGGTTCCTGGTTTCATAAATCCTTCTGAACCCAATTCCATGGAGATGGTTTTGGTCGATGAAAAGGGAGGCAAAATTCATGCAACTATTAGGAGACAATTGCTCTACATGTTTGATGGAAAGATTGAAGAAGGATCTGTTTATCAAATGTCTTTTTTCTCTGTTTGTCCTGCTACTGGTTACTATCGATCCACTTTGCATCCATACAAATTGCTTTTCCAGGTTAAGACAAGGGTTAAACTTGCACCCGGTTCTGAGATATCTACCTATGGATTGAGTTTGTTAAAGCTGTCTGAAGTTCTTGCTCATACTCATGACTATGAGTTTTTGGTTGATGTCATTGGTTTGATGACTGGAATGTCTGCTGAAAGGGAATATATGAGGGATGGAAGGATTACAAAGATGGTTCTTATTGAGTTAACAGATGATAGTGGGAAGTGTGAGTGTGCCCTCTTTGGTGATTATGTGGATAGTCTAAAGAAGATGATGGGAAAGAGTGGTGAGGGCCTTCCTGTTGTTGTAATTCAATTTGCAAAGGTTAAGCTTTTTAGAGACAAAGTTTCTCTTCAAAATGTGCTGGACACTACTAGGGTTTTTGTTGATCCAGATATTCCTGAAGCACAAGAATTTAAGAATAGCCTTTCTCTCCATGGCATTGATAATTCAGGTGCTTATTACTGCAATAGTTGTGCCAAACACATATTTCAAGTTGTGCCAAGGTTTAAGGTTAAGGTTCATGTTTCTGATGGCAAGACTACTTGTGTATTTGTTCTTTTTGATGCTGACATGAGCTACATAATGGAAAAATCTTGTGCTCATTTTGTTGCTGCAGCAAAGGCCGATAAGGATGGTAGTTTCCCTTTAGAATTTGACTCTATGGTTGTGTGCATGGATTCCACTATTATTGAGAAGTTCTGTGCTGAAGGACCTTTTGTTACTCCTCTTAAGCCTATTCCCACCATCAATTTGGATGATGATTCTGATGTTTTTGTTGATTCTTCTGATGAATCTGATGTTGTTGATGACTCTGAAGATTCTGATTTCACATCCAATCTTATTGTTACTCCTAAATCTGTTGGTAAAGAACCCTGTGTTTCCAAGGAAGATGATGTTGATGATGTTGTTATAACTGCTGAAATCAAAATTGAGGAGTCCCCTCCTAAGGGCAGAGGTTGCAAGAGAAACTTTAAACGAAATTTGACCAAGGCTTTTGATGCTGCTGCTCCGAAATCTGCGATTCCTCTTAAGGCTGTTAAGATTGAAAAGGAGTGA 1377 0.3871 MMEKTSMDKIKFDSLHEILPGRESWRIKVRVLRMWKVPGFINPSEPNSMEMVLVDEKGGKIHATIRRQLLYMFDGKIEEGSVYQMSFFSVCPATGYYRSTLHPYKLLFQVKTRVKLAPGSEISTYGLSLLKLSEVLAHTHDYEFLVDVIGLMTGMSAEREYMRDGRITKMVLIELTDDSGKCECALFGDYVDSLKKMMGKSGEGLPVVVIQFAKVKLFRDKVSLQNVLDTTRVFVDPDIPEAQEFKNSLSLHGIDNSGAYYCNSCAKHIFQVVPRFKVKVHVSDGKTTCVFVLFDADMSYIMEKSCAHFVAAAKADKDGSFPLEFDSMVVCMDSTIIEKFCAEGPFVTPLKPIPTINLDDDSDVFVDSSDESDVVDDSEDSDFTSNLIVTPKSVGKEPCVSKEDDVDDVVITAEIKIEESPPKGRGCKRNFKRNLTKAFDAAAPKSAIPLKAVKIEKE 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01970 458 SUPERFAMILY Nucleic acid-binding proteins 10 118 IPR012340 -
Trre1g01970 458 SUPERFAMILY Nucleic acid-binding proteins 256 318 IPR012340 -
Trre1g01970 458 CDD RPA1_DBD_B_like 147 249 - -
Trre1g01970 458 SUPERFAMILY Nucleic acid-binding proteins 128 254 IPR012340 -
Trre1g01970 458 Gene3D - 251 332 IPR012340 -
Trre1g01970 458 Gene3D - 128 250 IPR012340 -
Trre1g01970 458 Pfam Domain of unknown function DUF223 50 124 IPR003871 -
Trre1g01970 458 CDD RPA1_DBD_A_like 26 114 - -
Trre1g01970 458 Gene3D - 11 116 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01970 Trre-Chr1 15720606 15723021 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01970 20 257 Core DNA Replication Machinery Family AT2G06510 25.506 2.31e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01970 - - tpra:123885964 362.459