Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01967 ATGAGTTCTGATGTTGAGACCCTTTACGATGATGTCATATGCATAAGACCAAGTAATGTGAGCAATGCTGTTTATCGGGTGAGGGTTTTAAGAAAATGGAAAGCTTGTGACAAATCAAAAGTTGAAACTGGTGAAACTTTGGAAATGGTTCTTATTGATAAATATGGACACAAGATACAGGCAACAGTTCCGTGGCAGTTAGTTCCTGTGTTTGATGAAATAATTACAGAGGGAGTGGTTTATGATATGAAATTTTTTTCTATTAGAATGAACATGAGTGACACTATGGCTACCTTTCACAAGTTTAAGTTAGTTTTTAATGTTCTTACTTTGGTTGACAGTGTTGAATCTTATATAATTTCGAACCATGGTTTGTCTCTTATAAATTCTAAAAATGTTCTTTCCTTAACAAAGGGGCTTGACTACTTGGTTGATGTGATTGGTGTCTTGACTTATATTAGGCATGACAAGGTCTTTTTTGACAATGGGATGTCTGTTGAAGCTGTCACTTTTGATCTCATTGATGAAAGGGGTACATTTCGTTGTGAGTTGTATGGTGATTATGTTGATCAGTTACGTGTGCTTTTGAAAAGATCTTGTCTTGGTCTGCCTATAGTGGTTCTGCAGTTTGTTAAGGTTAAGAGAGTTCAAGGTTCTTGCTTAGTTACAAGTGTTGAACGTATTACTAAGATTATGGTTAACCCTCCAATTGCAGAAGTTGTGAATTTTAGGAGTGGATTGGATCTTTGTCTCGATAAGGTTCGAACATCAATTTCAGTATCCCGCCCGCTGCCGAAACCATTGTCTTCCACCATTCTTGATTTCAAAATAGACTATCCATTTAGAACTGTAGCTGAACTTAAGACAAATCCGGAGCTTGGGATTTTTATTCTAAATGCTAGAATTGCTGGTATAACTGATCTCAATCCATGGTGGTATCCTATATGTGGTTGCCATGAGATTATTGAGACATATGTTGGTGCATTTTTCTGTCAAAAGTGCCATTGTGCCGACTTTTATGTTTCCGTCAAGGATCAATTCTGCATGGCTGTTGAGGATGAAAGTGGTTCAACTTATGTTAATGCATTTGATCATGTGATGTTCAGTCTTTCTGGATTTAAAACCAATCCTCATCAACCAATTAAGTACCATTATATGAGTTCTGCTCAGTCTATAGTGGGGAAAAGCATTCTGTTTGTTGTTGAAAAATCTGTCCATGAACCTTATAATCCTGAGGCTTGGTTTGAAGTTCTTGCTGTTACTGCTGATGATTCTATAATCCAACAGTACATGGACAATGGTTCATGCAATACTCCCTCCAAGGTTATTGCAGAAAGATCAGATGATGATCCACTCTTTCTTCCACTGAAATCATTTTATTCACCCACTACAACTACTGATTCATTGTTCAATGAATATTTAGATTCATTTGATGCACTCTTTTCGTGGGATATAGATTGTGACTCTGTTCGTGTGAATTTTAGAACCTCATTTGAGTGGGAAATAAATGTTTCTTCTGCTATGGCTAAGGGTCGAAATGTGCTGAATTTTCCAAGAGATTATACAAGAAATTGTTTGAAGAAATCTGATATCAACATTTATCTTTTGGATCAAACAACCGGGAAAGTTTTTAAGAGTCCTATTTTTACATCAACTACCAATGACGAAGATCGTTTTATCTATTCTGGTTGGAAGAGGTTTATTAAAGAGAAGAGGTTGAGATTTAAAGATAAAGTCATTTTCAAATCCTCAGAGTTTAATAATGTTTTAGATGTCCAGATAGTACGTCGTGCCGTTTCCCGTTAG 1806 0.3621 MSSDVETLYDDVICIRPSNVSNAVYRVRVLRKWKACDKSKVETGETLEMVLIDKYGHKIQATVPWQLVPVFDEIITEGVVYDMKFFSIRMNMSDTMATFHKFKLVFNVLTLVDSVESYIISNHGLSLINSKNVLSLTKGLDYLVDVIGVLTYIRHDKVFFDNGMSVEAVTFDLIDERGTFRCELYGDYVDQLRVLLKRSCLGLPIVVLQFVKVKRVQGSCLVTSVERITKIMVNPPIAEVVNFRSGLDLCLDKVRTSISVSRPLPKPLSSTILDFKIDYPFRTVAELKTNPELGIFILNARIAGITDLNPWWYPICGCHEIIETYVGAFFCQKCHCADFYVSVKDQFCMAVEDESGSTYVNAFDHVMFSLSGFKTNPHQPIKYHYMSSAQSIVGKSILFVVEKSVHEPYNPEAWFEVLAVTADDSIIQQYMDNGSCNTPSKVIAERSDDDPLFLPLKSFYSPTTTTDSLFNEYLDSFDALFSWDIDCDSVRVNFRTSFEWEINVSSAMAKGRNVLNFPRDYTRNCLKKSDINIYLLDQTTGKVFKSPIFTSTTNDEDRFIYSGWKRFIKEKRLRFKDKVIFKSSEFNNVLDVQIVRRAVSR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01967 601 Pfam B3 DNA binding domain 510 590 IPR003340 GO:0003677
Trre1g01967 601 SUPERFAMILY Nucleic acid-binding proteins 25 113 IPR012340 -
Trre1g01967 601 Gene3D - 276 430 IPR012340 -
Trre1g01967 601 Gene3D - 493 598 IPR015300 -
Trre1g01967 601 SUPERFAMILY DNA-binding pseudobarrel domain 508 587 IPR015300 -
Trre1g01967 601 Gene3D - 14 117 IPR012340 -
Trre1g01967 601 Pfam Domain of unknown function DUF223 48 115 IPR003871 -
Trre1g01967 601 CDD RPA1_DBD_B_like 145 248 - -
Trre1g01967 601 SUPERFAMILY Nucleic acid-binding proteins 140 249 IPR012340 -
Trre1g01967 601 CDD RPA1_DBD_A_like 26 112 - -
Trre1g01967 601 ProSiteProfiles B3 DNA-binding domain profile. 500 598 IPR003340 GO:0003677
Trre1g01967 601 CDD B3_DNA 505 596 IPR003340 GO:0003677
Trre1g01967 601 SUPERFAMILY Nucleic acid-binding proteins 281 405 IPR012340 -
Trre1g01967 601 Gene3D - 120 249 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01967 Trre-Chr1 15712227 15715911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01967 51 364 Core DNA Replication Machinery Family AT5G08020 24.251 5.48e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01967 - - tpra:123922259 371.318