Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01958 ATGTCCCTTGAAGAGACTCTAAGATCTCTCTCCCTTGATTATCTCAACCTTTTAATCAATGGTCAAGCTTTTAGTGACGTCACTTTTCAAGTTGAAGGTCGTTTGGTTCATGCTCATCGATGCATCTTAGCAGCAAGGAGTCTTTTCTTCAGGAAATTCTTTTGTGGGCCAGACCCACCATCGGGATTAGACCCAACAGGAGGAGGAACATCTCGTCAACCAACAGGAAGACCTGGTGTTATTCCGGTGAACTCTGTCGGTTACGAGGTGTTTCTGCTCCTGTTGCAGTTTTTGTACAGTGGACAAGTTTCTATTGTTCCTCAGAAACATGAACCTAGACCTAATTGTGGTGAAAGAGGTTGTTGGCATACGCATTGTACCTCAGCCGTTGATCTTGCACTTGATACTCTTGCTGCTGCTAGATACTTTGGTGTTGAACAACTTGCATTGCTCACTCAGAAGCAACTAGTGAGCATGGTAGAAAAAGCCTCAATAGACGATGTGATGAAAGTACTAATAGCTTCAAGAAAGCAAGAAATGCACCAACTATGGACAACATGTTCCCACCTTGTTGCAAAGTCAGGTCTCCCACCCGAAATCCTAGCTAAACATCTCCCCATCGATGTAGTTGCCAAAATCGAAGAGCTTCGTCTCAAAACCTCCTTAGCACGCCGCTCCTTAATGCCACTCCACCACCATCATCACCACCACCACCATGACCTCGGGGACCTCGAAGATCAGAAAATCCGCCGAATGAGGCGAGCCCTCGATTCCTCTGATGTCGAACTAGTTAAACTCATGGTCATGGGAGAAGGCCTAAACCTCGACGAAGCATTGGCGTTACACTATGCAGTTGAAAATTGCAGCAGAGAAGTGGTTAAAGCCTTGCTCGAACTCGGTGCTGCCGATGTTAACTACCCGGCTGGTCCTGCCGGGAAAACACCACTTCATGTGGCCGCGGAAATGGTTTCACCGGAAATGGTAGCGGTTTTACTTGACCACCATGCAGACCCGGCAATTAGAACCGTTGATGGTGTAACACCTTTGGATATACTCAGAACCCTAACCTCTGATTTTCTATTCAAAGGTGCTGTTCCTGGATTAACTCACATTGAACCAAACAAGCTAAGATTGTGCTTAGAACTTGTTCAATCCGCGGCTCTTGTTCTTTCGCGTGAAGAAAACAACGCGAATAACAACAACAATAATGCTTCTTCATCAGCAGCACCAATTTATCCTCCTATGAGTGAAGATCATAGTAGTAGCAGCAGTGGTAACAACAACAATAACAACACCAGCAACATTGGTAACCTGAACTTGGATTCAAGATTGGTATATCTCAACCTTGGTGCTACTCATATGGGTGGTGATGATGATAGTGGACACAATAGTCATCATCATAGGGAAGCCATGAATCGTCAAAGTGGCCATGGATGTGACCCAACAATGTATCATCACTCTCATGACTACTAA 1473 0.4521 MSLEETLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGGGTSRQPTGRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLVSMVEKASIDDVMKVLIASRKQEMHQLWTTCSHLVAKSGLPPEILAKHLPIDVVAKIEELRLKTSLARRSLMPLHHHHHHHHHDLGDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPAIRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREENNANNNNNNASSSAAPIYPPMSEDHSSSSSGNNNNNNTSNIGNLNLDSRLVYLNLGATHMGGDDDSGHNSHHHREAMNRQSGHGCDPTMYHHSHDY 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01958 490 CDD BTB_POZ_NPR_plant 8 160 - -
Trre1g01958 490 MobiDBLite consensus disorder prediction 455 481 - -
Trre1g01958 490 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Trre1g01958 490 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Trre1g01958 490 FunFam regulatory protein NPR5 isoform X2 242 359 - -
Trre1g01958 490 SMART BTB_4 25 160 IPR000210 GO:0005515
Trre1g01958 490 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 489 IPR044284 GO:0099402
Trre1g01958 490 ProSiteProfiles Ankyrin repeat region circular profile. 311 337 - -
Trre1g01958 490 Gene3D Potassium Channel Kv1.1; Chain A 3 193 IPR011333 -
Trre1g01958 490 SUPERFAMILY Ankyrin repeat 270 354 IPR036770 -
Trre1g01958 490 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Trre1g01958 490 SUPERFAMILY POZ domain 10 158 IPR011333 -
Trre1g01958 490 MobiDBLite consensus disorder prediction 396 436 - -
Trre1g01958 490 Pfam Domain of unknown function (DUF3420) 195 253 IPR024228 -
Trre1g01958 490 Pfam Ankyrin repeats (3 copies) 259 341 IPR002110 GO:0005515
Trre1g01958 490 MobiDBLite consensus disorder prediction 458 474 - -
Trre1g01958 490 FunFam regulatory protein NPR5 isoform X1 4 193 - -
Trre1g01958 490 Gene3D - 244 359 IPR036770 -
Trre1g01958 490 SMART ANK_2a 276 306 IPR002110 GO:0005515
Trre1g01958 490 SMART ANK_2a 311 340 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01958 Trre-Chr1 15643096 15647098 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre1g01958 BTB 3.7e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01958 K14508 - zju:107433767 779.63