Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01940 ATGGCAAAGAGGAAGAGCTGGTTTGGATGGGTGAAAAGTCTTTTCATTTCTGAGTTAAAGGACAAAAAGCAAAAGAAATGGGCATGGAGATTAGGAAAGATTAAACAGAAGCAATACCCTTCAATTACAGCTTCAAATAAGACATTGATTGAAGAAGCAAGTGCAGACCAAAGAAAACATGCTTTAGCTGTGGCTATTGCAACAGCTGCTGCTGCAGAGGCTGCAATTGCTGCTGCACATGCTGCTGCTGAGGTTGTCAAGCTCACAGATGGCACGTCTCGTTCGTATTCATATCTGTCTAAGGGAGACAGAAGTTTTGCTGCCATCAAGATTCAAAGCGCTTACCGTGCACATCTTGCTAGGAAAGCATTAAGAGCATTGAAGGGAGTTATAAGACTACAGGCCATAATTCGTGGAGAAGCTGTTAGGCGTCAAGTGTCGAGAACATCAAAGAATGTTCCCTCTTATGCAAAAAATCGGAAGGAAATCCAGGAAAGAAACAGCCATACTGAGGAAGAAAACTACAAAAATTACCATGTAAAACAGTTTCCAAAGCAAAAGAAAAGCATAGAAGAAAATGAACTTAAGGGAAGGTCTGCATTGAATTTGAGGAGTCCTGATGTCAAATCCACTCAAACAAATTTGCAGCCTGAATGTGATAGTCAGAGAACTTGGAATTATAGCTCTTATTCAAGAGAAGACATTGAAGCCATATGGTTAAGAAAGCAAGAAGCTATTTTCAAAAGAGACAGAATGAAGCAATACTCTTCTTCACAAAAGGAGAGAAGATTTTCCCAAAGGGTGGAAGAATCTCAGCAGGACAAAGAATTTGGAGGAGATAGTTGTCATACTCTAGGAGAGTGGCTACATAAAGAAACATGTAACTGGAATGATCCTTCAAATATCACAATAAGAAATGAAGTGCAAGAAGGATTAAGATCACAAATTTCAGCCCAAAGAAAATCATTTTCTCATGTGAAAAAAAGTTCATTTGGAGATGAGTGTTCCATGCCAAATTCTCCAGTTTTTCCTAAATACATGGCTGTCACTGAATCTAGTAAAGCAAAAGTAAGGTCTATGAGCACACCAAGGCTAAGAACATGA 1104 0.3913 MAKRKSWFGWVKSLFISELKDKKQKKWAWRLGKIKQKQYPSITASNKTLIEEASADQRKHALAVAIATAAAAEAAIAAAHAAAEVVKLTDGTSRSYSYLSKGDRSFAAIKIQSAYRAHLARKALRALKGVIRLQAIIRGEAVRRQVSRTSKNVPSYAKNRKEIQERNSHTEEENYKNYHVKQFPKQKKSIEENELKGRSALNLRSPDVKSTQTNLQPECDSQRTWNYSSYSREDIEAIWLRKQEAIFKRDRMKQYSSSQKERRFSQRVEESQQDKEFGGDSCHTLGEWLHKETCNWNDPSNITIRNEVQEGLRSQISAQRKSFSHVKKSSFGDECSMPNSPVFPKYMAVTESSKAKVRSMSTPRLRT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01940 367 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Trre1g01940 367 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Trre1g01940 367 MobiDBLite consensus disorder prediction 158 177 - -
Trre1g01940 367 MobiDBLite consensus disorder prediction 197 221 - -
Trre1g01940 367 Pfam Protein of unknown function (DUF4005) 337 366 IPR025064 -
Trre1g01940 367 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Trre1g01940 367 Gene3D - 104 153 - -
Trre1g01940 367 MobiDBLite consensus disorder prediction 204 221 - -
Trre1g01940 367 MobiDBLite consensus disorder prediction 254 278 - -
Trre1g01940 367 PANTHER IQ-DOMAIN 5-RELATED 6 364 - -
Trre1g01940 367 MobiDBLite consensus disorder prediction 148 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01940 Trre-Chr1 15509475 15511726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01940 1 367 IQD Protein Family AT5G03960 41.146 2.35e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01940 - - gmx:100800767 399.823