Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01939 ATGGCGGAATACGATCTAACACCGCGAATGGCACCAAATCTTGACCGACATTTAGTCTTCCCTCTCTTAGAGTTTCTTCAAGAGAGACAATTATACGACGATAACCACATCCTTAAGGCTAAGATCGATCTATTGAACAACACAAACATGGTTGATTATGCAATGGATATTCACAAGACGCTTTACCATACCGAAGATGTTCCTCAAGATATGGTTGAACGTAGGGCTGATGTTGTTGCTCGTCTTAAGTCTCTTGAAGATGCTGCTGCTCCTCTTGTTGCTTTTCTTCAGAATCCTGCTGCTGTTCAGGAATTGAGGGCTGATAAACTTTATAATCTTCAGATGCTTAATGACAAATACCAGATTGGTCCTGAACAGATAGAGGCACTATACCAATATGCGAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTATCAGTACAGAGCATTATGCACAAATAGTGAAAGGAGTTTGAATGCATTATGGGGAAAGCTGGCAGCTGAAGTATTGATGCAAAATTGGGATATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATAATTGACTCAAAGAATTTTTCATCACCTATTAATCAGGTGCAGAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGAACACAGATAATTGATTTGTTTAACCAGGACAAGTATCTTAATGCAATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCCACAGCATTTATTGTCAACAAGCGCAGGAGACCTCAATTCAAAGATTTTATAAAGGTTATTCAACAAGAGCAGAATTCATATAAGGACCCGATCACCGAGTTTCTGGCTTGTGTTTATGTCAACTATGACTTTGATGGTGCACAAAAGAAGATGAGGGAATGTGAAGAAGTAATTCTCAATGATCCCTTCCTTGGTAAACGAGTTGAAGAAGGCAACTTCTCAACTGTACCATTAAGAGACGAGTTTCTTGAAAATGCCAGGCTGTTTATTTTTGAGACATATTGTAGAATACACCAACGCATTGACATGGGAGTACTTGCTGAGAAGCTAAATTTGAATTACGAGGAGGCTGAAAGATGGATTGTGAATCTCATCCGTGGCTCAAAGCTTGATGCCAAAATTGACTCTGAAACTGGAACAGTTATCATGGAACCTAATCATCCAAATGTGTATGAGCAGGTGATAGACCATACCAAGGCCCTTAACGGCCGCACTTACAAGTTGGTCACTCAACTTCTGGAGCATGCACAAGCTCAGACAGCTCGATAA 1314 0.4011 MAEYDLTPRMAPNLDRHLVFPLLEFLQERQLYDDNHILKAKIDLLNNTNMVDYAMDIHKTLYHTEDVPQDMVERRADVVARLKSLEDAAAPLVAFLQNPAAVQELRADKLYNLQMLNDKYQIGPEQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLNALWGKLAAEVLMQNWDIALEELNRLKEIIDSKNFSSPINQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEEGNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRGSKLDAKIDSETGTVIMEPNHPNVYEQVIDHTKALNGRTYKLVTQLLEHAQAQTAR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01939 437 PIRSF Transl_init_eIF3e 1 437 IPR016650 GO:0003743|GO:0005737|GO:0005852
Trre1g01939 437 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 416 IPR000717 -
Trre1g01939 437 Pfam PCI domain 285 399 IPR000717 -
Trre1g01939 437 SMART eIF3_N_2 5 137 IPR019010 -
Trre1g01939 437 ProSiteProfiles PCI domain profile. 219 403 IPR000717 -
Trre1g01939 437 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Trre1g01939 437 SUPERFAMILY TPR-like 120 193 IPR011990 GO:0005515
Trre1g01939 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 435 IPR016650 GO:0003743|GO:0005737|GO:0005852
Trre1g01939 437 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 429 IPR016650 GO:0003743|GO:0005737|GO:0005852
Trre1g01939 437 CDD eIF3E 3 429 IPR016650 GO:0003743|GO:0005737|GO:0005852
Trre1g01939 437 SUPERFAMILY "Winged helix" DNA-binding domain 332 403 IPR036390 -
Trre1g01939 437 Gene3D - 225 433 - -
Trre1g01939 437 FunFam Eukaryotic translation initiation factor 3 subunit E 228 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01939 Trre-Chr1 15504037 15507392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01939 4 437 Eukaryotic Initiation Factors Gene Family AT3G57290 86.406 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01939 K03250 - gmx:100797748 848.195