Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01936 ATGGCGCAGAGTAATTGGGAAGCCGATAAGATGCTTGATGTTTACATATATGATTATTTGATGAAGAAAAAGTTGCACAATACCGCCAAGTCATTTATGACAGAAGGGAAGGTTTCTCCGGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAAAATGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCGAAAGAACAACAATTGCAAATGCAACAGTTGCAATTAATGCGTCATGCTCAGCTGCAAAAAAGAGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACCTCAGAAGGAGTCCTAGGGCAATCTACTGCCACTGCGTTGGCTGCAAAAATGTACGAGGATCGGATGAAGAGCTCTAATCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCCGGTCAGATGGTTCAAGCAAATTCAGGAAGTGTGACAGCTTTGCAGCAAATGCAGGCTCGAACTCAGCAAATCCCGGATATCAAAAGCGAAGTCAACATGGGAAACATGCAAAGATCCTTACCTATGGATCCTTCTTCCATTTATGGGCAGGGAGGAATGCAGTCAAAGTCTGGAATCACAAACACAGGATTAAATCAGGGAGTTGGTGGTCTTACATTAAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAGGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAGCAGCAGCAGCTCCTTGCACAGGCACATGCACAAGGAAATATTGGCAATTCACAAGTGTATGGAGATATGGATCCACAGCGATTAAGGGGATTATCTAGGGGAGGTTTGAATATGAAAGACAGTCAACCAAGTGCAAATGATGGGCCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATGCAACAATCCTCCCAACAACAACAGGATCCTTTGCATCCACAGCAAATGGTTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGTACTGGTACAGGAAACACACACGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGGGTTGCTATGGTGGGTAACTTGCAGAATGTTGCTGCTGTATCCAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGAAAGGACTTATTTGGGACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGCCTTTTCCTTCAGTGAAGTTAGCTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCGTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGCTATTATTACCGACGTTCGCTTCAGGCCAAATTCAACTCAGCTGGCAACGTCTTCGTTTGATACAACTGTGCGGCTTTGGGATGCTGCAGAAACAAGCTTTTCATTGCAGGCATATAGTGGTCATACTTCACATGTTGCATCCCTTGATTTCCACCCTAAGAAAAATGATATTTTCTGCTCATGTGATGATAACAATGAGATTCGCTTATGGAATATTAGTCAATATTCTTGTACTCGCGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCGAGGAGTGGACACCTTCTGGCTGCAGCATCCGGCAATGTTGTGTCTGTCTTTGATGTTGAGACTGACAGGCAAATGCACTCATTACAGGGACACTCTGCGGAGGTACATTGTGTATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGCCAAGAATCTGTTAAAGTTTGGTCACTTGCCTCTGGTGATTGCATTCATGAACTTACTTCCAGTGGAAACATGTTTCAATCTTGCGTTTTTCACCCAAACTACTCTAACCTCTTGGTTATTGGAGGATACCAGTCATTGGAGTTATGGAACATGGCTGAAAATAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCTGTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGCCATGACAAGTCTGTAAAGATATGGAAATAA 2343 0.4341 MAQSNWEADKMLDVYIYDYLMKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLEAQQIKAKEQQLQMQQLQLMRHAQLQKRDPNHPPIGSPLNAITSEGVLGQSTATALAAKMYEDRMKSSNPMDTETSQPLLDARMALLKSTNHPGQMVQANSGSVTALQQMQARTQQIPDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNTGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQRPLLQSANQFQLLPQQQQQQLLAQAHAQGNIGNSQVYGDMDPQRLRGLSRGGLNMKDSQPSANDGPIGSPMQSTSSKINMPQMQQSSQQQQDPLHPQQMVQNNRKRKGPTSSGAANSTGTGNTHGPSNSQPSTPSTHTPGDGVAMVGNLQNVAAVSKGLMMYGTEGAGGLASSTNQLDDMEHFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKAFSFSEVSSIRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTAIITDVRFRPNSTQLATSSFDTTVRLWDAAETSFSLQAYSGHTSHVASLDFHPKKNDIFCSCDDNNEIRLWNISQYSCTRVFKGGSTQVRFQPRSGHLLAAASGNVVSVFDVETDRQMHSLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELTSSGNMFQSCVFHPNYSNLLVIGGYQSLELWNMAENKCMTIPAHEGVISAVAQSPVTGMVASASHDKSVKIWK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01936 780 Pfam LisH 10 36 IPR006594 GO:0005515
Trre1g01936 780 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Trre1g01936 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 748 780 - -
Trre1g01936 780 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 780 IPR044716 GO:0003714
Trre1g01936 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 666 706 IPR001680 GO:0005515
Trre1g01936 780 Pfam WD domain, G-beta repeat 581 617 IPR001680 GO:0005515
Trre1g01936 780 Pfam WD domain, G-beta repeat 536 573 IPR001680 GO:0005515
Trre1g01936 780 Pfam WD domain, G-beta repeat 747 780 IPR001680 GO:0005515
Trre1g01936 780 Pfam WD domain, G-beta repeat 662 697 IPR001680 GO:0005515
Trre1g01936 780 Pfam WD domain, G-beta repeat 504 531 IPR001680 GO:0005515
Trre1g01936 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 573 IPR001680 GO:0005515
Trre1g01936 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 626 IPR001680 GO:0005515
Trre1g01936 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Trre1g01936 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 748 780 IPR001680 GO:0005515
Trre1g01936 780 MobiDBLite consensus disorder prediction 319 404 - -
Trre1g01936 780 PRINTS G protein beta WD-40 repeat signature 767 780 IPR020472 -
Trre1g01936 780 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Trre1g01936 780 PRINTS G protein beta WD-40 repeat signature 560 574 IPR020472 -
Trre1g01936 780 MobiDBLite consensus disorder prediction 298 409 - -
Trre1g01936 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 619 - -
Trre1g01936 780 SUPERFAMILY WD40 repeat-like 492 780 IPR036322 GO:0005515
Trre1g01936 780 Coils Coil 79 99 - -
Trre1g01936 780 Gene3D - 631 780 IPR015943 GO:0005515
Trre1g01936 780 CDD WD40 495 780 - -
Trre1g01936 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 573 - -
Trre1g01936 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 534 - -
Trre1g01936 780 Gene3D - 476 630 IPR015943 GO:0005515
Trre1g01936 780 SMART Lish 8 40 IPR006594 GO:0005515
Trre1g01936 780 SMART WD40_4 741 780 IPR001680 GO:0005515
Trre1g01936 780 SMART WD40_4 534 573 IPR001680 GO:0005515
Trre1g01936 780 SMART WD40_4 577 617 IPR001680 GO:0005515
Trre1g01936 780 SMART WD40_4 659 697 IPR001680 GO:0005515
Trre1g01936 780 SMART WD40_4 620 656 IPR001680 GO:0005515
Trre1g01936 780 SMART WD40_4 700 739 IPR001680 GO:0005515
Trre1g01936 780 SMART WD40_4 492 531 IPR001680 GO:0005515
Trre1g01936 780 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01936 Trre-Chr1 15464882 15479877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01936 493 698 U-box Gene Family AT2G33340 26.852 5.82e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre1g01936 WD40 0.0076 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01936 - - var:108326218 1335.86