Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01935 ATGGCGCAGAGTAATTGGGAAGCCGATAAGATGCTTGATGTTTACATATATGATTATTTGATGAAGAAAAAGTTGCACAATACCGCCAAGTCATTTATGACAGAAGGGAAGGTTTCTCCGGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAAAATGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCGAAAGAACAACAATTGCAAATGCAACAGTTGCAATTAATGCGTCATGCTCAGCTGCAAAAAAGAGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACCTCAGAAGGAGTCCTAGGGCAATCTACTGCCACTGCGTTGGCTGCAAAAATGTACGAGGATCGGATGAAGAGCTCTAATCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCCGGTCAGATGGTTCAAGCAAATTCAGGAAGTGTGACAGCTTTGCAGCAAATGCAGGCTCGAACTCAGCAAATCCCGGATATCAAAAGCGAAGTCAACATGGGAAACATGCAAAGATCCTTACCTATGGATCCTTCTTCCATTTATGGGCAGGGAGGAATGCAGTCAAAGTCTGGAATCACAAACACAGGATTAAATCAGGGAGTTGGTGGTCTTACATTAAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAGGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAGCAGCAGCAGCTCCTTGCACAGGCACATGCACAAGGAAATATTGGCAATTCACAAGTGTATGGAGATATGGATCCACAGCGATTAAGGGGATTATCTAGGGGAGGTTTGAATATGAAAGACAGTCAACCAAGTGCAAATGATGGGCCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATGCAACAATCCTCCCAACAACAACAGGATCCTTTGCATCCACAGCAAATGGTTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGTACTGGTACAGGAAACACACACGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGGGTTGCTATGGTGGGTAACTTGCAGAATGTTGCTGCTGTATCCAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGAAAGGACTTATTTGGGACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGCCTTTTCCTTCAGTGAAGTTAGCTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCGTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGCTATTATTACCGACGTTCGCTTCAGGCCAAATTCAACTCAGCTGGCAACGTCTTCGTTTGATACAACTGTGCGGCTTTGGGATGCTGCAGAAACAAGCTTTTCATTGCAGGCATATAGTGGTCATACTTCACATGTTGCATCCCTTGATTTCCACCCTAAGAAAAATGATATTTTCTGCTCATGTGATGATAACAATGAGATTCGCTTATGGAATATTAGTCAATATTCTTGTACTCGCGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCGAGGAGTGGACACCTTCTGGCTGCAGCATCCGGCAATGTTGTGTCTGTCTTTGATGTTGAGACTGACAGGCAAATGCACTCATTACAGGGACACTCTGCGGAGGTACATTGTGTATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGCCAAGAATCTGTTAAAGTTTGGTCACTTGCCTCTGGTGATTGCATTCATGAACTTACTTCCAGTGGAAACATGTTTCAATCTTGCGTTTTTCACCCAAACTACTCTAACCTCTTGGTTATTGGAGGATACCAGTCATTGGAGTTATGGAACATGGCTGAAAATAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCTGTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGCCATGACAAGTCTGTAAAGATATGGAAATAA 2349 0.4342 MAQSNWEADKMLDVYIYDYLMKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLEAQQIKAKEQQLQMQQLQLMRHAQLQKRDPNHPPIGSPLNAITSEGVLGQSTATALAAKMYEDRMKSSNPMDTETSQPLLDARMALLKSTNHPGQMVQANSGSVTALQQMQARTQQIPDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNTGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQRPLLQSANQFQLLPQQQQQQLLAQAHAQGNIGNSQVYGDMDPQRLRGLSRGGLNMKDSQPSANDGPIGSPMQSTSSKINMPQMQQSSQQQQDPLHPQQMVQNNRKRKGPTSSGAANSTGTGNTHGPSNSQPSTPSTHTPGDGVAMVGNLQNVAAVSKGLMMYGTEGAGGLASSTNQLLQDDMEHFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKAFSFSEVSSIRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTAIITDVRFRPNSTQLATSSFDTTVRLWDAAETSFSLQAYSGHTSHVASLDFHPKKNDIFCSCDDNNEIRLWNISQYSCTRVFKGGSTQVRFQPRSGHLLAAASGNVVSVFDVETDRQMHSLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELTSSGNMFQSCVFHPNYSNLLVIGGYQSLELWNMAENKCMTIPAHEGVISAVAQSPVTGMVASASHDKSVKIWK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01935 782 SMART WD40_4 494 533 IPR001680 GO:0005515
Trre1g01935 782 SMART WD40_4 743 782 IPR001680 GO:0005515
Trre1g01935 782 SMART WD40_4 661 699 IPR001680 GO:0005515
Trre1g01935 782 SMART WD40_4 536 575 IPR001680 GO:0005515
Trre1g01935 782 SMART WD40_4 579 619 IPR001680 GO:0005515
Trre1g01935 782 SMART WD40_4 622 658 IPR001680 GO:0005515
Trre1g01935 782 SMART WD40_4 702 741 IPR001680 GO:0005515
Trre1g01935 782 Gene3D - 478 632 IPR015943 GO:0005515
Trre1g01935 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 536 - -
Trre1g01935 782 CDD WD40 497 782 - -
Trre1g01935 782 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Trre1g01935 782 SUPERFAMILY WD40 repeat-like 494 782 IPR036322 GO:0005515
Trre1g01935 782 MobiDBLite consensus disorder prediction 319 404 - -
Trre1g01935 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 708 IPR001680 GO:0005515
Trre1g01935 782 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 782 IPR044716 GO:0003714
Trre1g01935 782 MobiDBLite consensus disorder prediction 298 409 - -
Trre1g01935 782 Pfam LisH 10 36 IPR006594 GO:0005515
Trre1g01935 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Trre1g01935 782 Coils Coil 79 99 - -
Trre1g01935 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 628 IPR001680 GO:0005515
Trre1g01935 782 Pfam WD domain, G-beta repeat 749 782 IPR001680 GO:0005515
Trre1g01935 782 Pfam WD domain, G-beta repeat 506 533 IPR001680 GO:0005515
Trre1g01935 782 Pfam WD domain, G-beta repeat 664 699 IPR001680 GO:0005515
Trre1g01935 782 Pfam WD domain, G-beta repeat 538 575 IPR001680 GO:0005515
Trre1g01935 782 Pfam WD domain, G-beta repeat 583 619 IPR001680 GO:0005515
Trre1g01935 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 542 IPR001680 GO:0005515
Trre1g01935 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 621 - -
Trre1g01935 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 750 782 IPR001680 GO:0005515
Trre1g01935 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 750 782 - -
Trre1g01935 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Trre1g01935 782 PRINTS G protein beta WD-40 repeat signature 520 534 IPR020472 -
Trre1g01935 782 PRINTS G protein beta WD-40 repeat signature 769 782 IPR020472 -
Trre1g01935 782 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
Trre1g01935 782 SMART Lish 8 40 IPR006594 GO:0005515
Trre1g01935 782 Gene3D - 633 782 IPR015943 GO:0005515
Trre1g01935 782 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01935 Trre-Chr1 15464882 15479877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01935 495 700 U-box Gene Family AT2G33340 26.389 5.74e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre1g01935 WD40 0.0076 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01935 - - var:108326218 1344.33