Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01927 ATGGCGAAAGGTGACGACTCTATCCAAAAAAAGCGGAACAAAAAGATTAGAAAAAGACTAAGCGGTAAAACTGACAAGACTTCCGTCTCTGCTAAGATTGCCGCTGTTATCGCCGCCAAGAAACGCCGTAAGGCCGGAAAACGCCGCATCTGCGAGGGTATGTGTTTTAGTTTACCTACTCTAGAGGATCCATTTAATGATAGACGTGGAAAACCGGAATTCAAAAAAAAGGAGGAAACTGAACAGAAAAAATCTTTCCAAAAAGAAAAGACACTACCTGTTAAAGGGAAGAGTGCACCCAGTGGGAAAGGCGCAGTTCGTCAAAGTATTTCACACAAATTGAATCAACAAACACGAAATGATGATGCTAATAATGAAAGTCACTCAGAAAAGGATAATGAAATTTCAGACTTTCCTTCCAAATTTGTTTTTTGGTGTCTGAGTACAATTGAAAACGCACTGCGATATGATGATGCCTACACTGATGGAGAGGGCAACTCTTTCTTTCTAAACTCGTGGGGATTAGAATTTTCAAAGTGTTTTCCGACTGGCAAAAATCTGATGGACACTGGTGGAACCTTTGCTACTACTGAGCAAATTGCATGGATGGTTTCTGCGGCAGCTGATACTTTTGTTAGAAAAGAGAAACAAGACGTATCAATAGACACCCCTTTTCTTTTGTTCCTCGTTCCTTCCGAAAAAAAAGCTGTCCAGGTTCGAACGGTTTGCAAGCCTTTGAAATCTATAGGAATACATACAGTGAGTGTTCATCCTGGTGCTTCCTTAGATCATCAAATTCAAGGTCTAAAAAGTTGTGAGCCTGAGTTTCTCATTGCTACTCCCGAGAGGCTCTTGGAACTTGTTTCAATGAAGGCAATTGATATTTCTGGTGTCTCTATGCTGATTATCGATGGGCTCAATGCTATTTGTAATGCTGGCCACGCTGATGCAATAAAATCCATCAAGAAGTTTATTTCTGGCAATCCCAGTCTTGTGGTTTTCAATGATAGCTTTAACCCTACATCTATCCCAGTTGTTCGGCATCTTCTGACGGAACCTATTTGTAGAATATCTATCGATAATTCAATCACCAGCCTAAGTTCATGCATTGTACAGTCTGTTCAAGTGTGTACATCAGACAAAGATAAACATGTTAAGAGCCTAGATATCCTGTGTCAATTTTGGAGCAGCCAGAATCATAGTTCAAACCTTCTATATATTTTGAGGAAAGATGTCAAGTGCCATAAATTAGTGAAGGCTCTCGAATCCATGGGTTGTTCCAAGTCACTTGATTCTAATGCTGCGAATAGGAGATTGGTTACAATGATTGATTTGGAGGATATCTCTACTACGGATATAGGGATGTATGATGTAGTAGTCCTACCAAGTTTTGTACCCTCCATGGACACTTATGAGCATATTTTGACAAACATGGCCCGCCAAAGTGTCAATGGTGTTTTGCATGCTTTCTTAACAAAAAGTGATACAGAACTTGCTGGACCACTCATTTCAATTCTTGAACAATGTAAGCAGGAAGTGCCCGAGACCCTGCAAGATCTGCATCAGGCATCAAACATGTTGGAAGATTGA 1590 0.4038 MAKGDDSIQKKRNKKIRKRLSGKTDKTSVSAKIAAVIAAKKRRKAGKRRICEGMCFSLPTLEDPFNDRRGKPEFKKKEETEQKKSFQKEKTLPVKGKSAPSGKGAVRQSISHKLNQQTRNDDANNESHSEKDNEISDFPSKFVFWCLSTIENALRYDDAYTDGEGNSFFLNSWGLEFSKCFPTGKNLMDTGGTFATTEQIAWMVSAAADTFVRKEKQDVSIDTPFLLFLVPSEKKAVQVRTVCKPLKSIGIHTVSVHPGASLDHQIQGLKSCEPEFLIATPERLLELVSMKAIDISGVSMLIIDGLNAICNAGHADAIKSIKKFISGNPSLVVFNDSFNPTSIPVVRHLLTEPICRISIDNSITSLSSCIVQSVQVCTSDKDKHVKSLDILCQFWSSQNHSSNLLYILRKDVKCHKLVKALESMGCSKSLDSNAANRRLVTMIDLEDISTTDIGMYDVVVLPSFVPSMDTYEHILTNMARQSVNGVLHAFLTKSDTELAGPLISILEQCKQEVPETLQDLHQASNMLED 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01927 529 Gene3D - 214 366 IPR027417 -
Trre1g01927 529 MobiDBLite consensus disorder prediction 104 122 - -
Trre1g01927 529 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 10 523 - -
Trre1g01927 529 Pfam DEAD/DEAH box helicase 204 325 IPR011545 GO:0003676|GO:0005524
Trre1g01927 529 MobiDBLite consensus disorder prediction 66 134 - -
Trre1g01927 529 MobiDBLite consensus disorder prediction 1 30 - -
Trre1g01927 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 354 IPR027417 -
Trre1g01927 529 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01927 Trre-Chr1 15404269 15409376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01927 215 520 Eukaryotic Initiation Factors Gene Family AT1G72730 19.385 1.41e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01927 - - gmx:100809099 673.7