Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01922 ATGTACGGCGGTGGTCACCGTGAACGTGAATCTGAATCTGATACCACGAGAATGCACAGCGATGAAGATGCCGAAGATGGAGACGATGACGATGGTTCGTTTAAGAGTTGGGCAAAACAAACAGAAGAAAGCTATCAGTTGCAACTCGCACTGGCGCTTCGCATTTCATCTCATTCAGCTTCTTCCTCTCAAACTAATTACTTGTTGGATTTTGAACCCACCTCTTCTCATTCTTCTTCTGATTCCCCTCAATCACTTTCACACCGTTTTTGGGTAAATGGTTGTTTGCAATACTCTGACAAAATTCTAGATGGCTTTTACATAATCCATGGGATGGATCCATATACATGGACTATAAGTACCGATATGCAGAATGTTGGTATGATTCCATCATTTGAATCACTGATGTCTGTTAAACCAAGTGATAACTCCTCAGTTGTAGTGGTTGCTATTGACAAAGCTAGAGACCCTGGCTTGAGAGAACTGCAAAGTGGGGTATTAAGTCTTTCAAGTAACTGGATTACTATCAAAGATGCAACTGATCAGCTTGCAAATCTTGTTTATAGTAGGATGGGGGGAGGATCTTCCGATGAGGAAAATTTAGGTACACGCTGGAAGGAATGCTCTGAAATACTTAAAAGCTGTCTACAATGTATCATTCTTCCAATTGGAAGCTTACCTGTTGGCCTTTGTGTCCATCGAGCATTGCTGTTTAAAGTGTTAGCGGATTTAATTAACCTACCGTGTCGAATTGCTAAGGGCTGCAAGTATTGTAGAAAAGACATGGGTGCTTCTTGTTTAGTACAATTTGGTTCTGACAGGGAGTATATGATTGATTTAGTAGGAAGGCCTGGGGAAACGTGTCAACCTGATTCTTCAGTGAATTCTGCATCTTCGATGTTGATCCCTTCACCATTATGTCATCCAAGGTTCAAGCCAGTTGAAACAGCTGAACATACAAAGACAATGGCCCAATTGTATTTCTTAGACAACCAAGCACTGCATCTTGTATTTGATTCCAAATCAGGAGGTACTATTGATTGTAGTGACAAAATGGATCTACAGCAAACTGAAATGTTCGGCACAAACTATGCTAGTGGGAACAACCATATAGTTGCTTTGAGTCCTGGTACAGAGGAACATGTGTCTTTCAATGAAGCAACCCTGTCAGTAGTGAATTATTCTAGTCATGAAGTCGACCTTGAGGAGGAGGATCTGGACATTCCGTGGAATGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTCCTTCGTGCGGACTGGCGTGGCTCTGATGTTGCTGTGAAGATACTTAAGGTGCAAGGTTTTGATTCTGAACGATTTGAAGAGTTTCTAAAGGAGGTCACACTCATGAAGCGTCTACGTCATCCAAACATTGTACTTCTAATGGGTGCCGTTATCCAACCACCAAAGTTATCAATAGTAACAGAATATTTATCAAGAGGAAGCTTGTATGAACTTCTGCAGATGCCAACTGTTGGACCTTCAATAAGTGAGAAGCGTCGTTTAAGTATGGCATATGACGTGGCAAGTGGAATGAATTATCTTCATCAAATGAAACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGTCTTTCACGTACAAAGGCAAATACATATCTTTCATCTAGAACAGCTGCTGGAACTCCTGAATGGATGGCACCAGAAGTCATCCGAGGTGAACAATCAAATGAAAAATGCGATGTATTTAGCTTTGGTGTAATCTTGTGGGAACTGGTGACCCTTCAACAACCATGGAGGCAGTTAAATCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGAGCAAAAGGCTAGACATTCCGAGGCATGTGAATCCTCAAGTGGCTGCCTTGATTGAGCTCTGCTGGTCTACGGAACCAAAGAGGCGGCCTTCTTTCTCCTACATTATGAAATGTTTGCAGCAAATAATTGCTGATGCTAAAGTGTGA 2031 0.4156 MYGGGHRERESESDTTRMHSDEDAEDGDDDDGSFKSWAKQTEESYQLQLALALRISSHSASSSQTNYLLDFEPTSSHSSSDSPQSLSHRFWVNGCLQYSDKILDGFYIIHGMDPYTWTISTDMQNVGMIPSFESLMSVKPSDNSSVVVVAIDKARDPGLRELQSGVLSLSSNWITIKDATDQLANLVYSRMGGGSSDEENLGTRWKECSEILKSCLQCIILPIGSLPVGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDMGASCLVQFGSDREYMIDLVGRPGETCQPDSSVNSASSMLIPSPLCHPRFKPVETAEHTKTMAQLYFLDNQALHLVFDSKSGGTIDCSDKMDLQQTEMFGTNYASGNNHIVALSPGTEEHVSFNEATLSVVNYSSHEVDLEEEDLDIPWNELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLKEVTLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLQMPTVGPSISEKRRLSMAYDVASGMNYLHQMKPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTYLSSRTAAGTPEWMAPEVIRGEQSNEKCDVFSFGVILWELVTLQQPWRQLNPSQVVAAVGFMSKRLDIPRHVNPQVAALIELCWSTEPKRRPSFSYIMKCLQQIIADAKV 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01922 676 CDD STKc_MAP3K-like 419 665 - -
Trre1g01922 676 Gene3D Phosphorylase Kinase; domain 1 406 491 - -
Trre1g01922 676 Pfam Protein tyrosine and serine/threonine kinase 414 667 IPR001245 GO:0004672|GO:0006468
Trre1g01922 676 SUPERFAMILY Protein kinase-like (PK-like) 391 667 IPR011009 -
Trre1g01922 676 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 68 670 - -
Trre1g01922 676 SMART serkin_6 413 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01922 676 ProSitePatterns Protein kinases ATP-binding region signature. 419 440 IPR017441 GO:0005524
Trre1g01922 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Trre1g01922 676 FunFam Serine/threonine-protein kinase isoform 1 403 491 - -
Trre1g01922 676 PRINTS Tyrosine kinase catalytic domain signature 575 585 IPR001245 GO:0004672|GO:0006468
Trre1g01922 676 PRINTS Tyrosine kinase catalytic domain signature 638 660 IPR001245 GO:0004672|GO:0006468
Trre1g01922 676 PRINTS Tyrosine kinase catalytic domain signature 487 500 IPR001245 GO:0004672|GO:0006468
Trre1g01922 676 PRINTS Tyrosine kinase catalytic domain signature 594 616 IPR001245 GO:0004672|GO:0006468
Trre1g01922 676 PRINTS Tyrosine kinase catalytic domain signature 528 546 IPR001245 GO:0004672|GO:0006468
Trre1g01922 676 MobiDBLite consensus disorder prediction 1 37 - -
Trre1g01922 676 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g01922 676 FunFam Serine/threonine-protein kinase CTR1 492 676 - -
Trre1g01922 676 ProSiteProfiles Protein kinase domain profile. 413 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01922 676 Pfam Ethylene-responsive protein kinase Le-CTR1 84 286 - -
Trre1g01922 676 Gene3D Transferase(Phosphotransferase) domain 1 492 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01922 Trre-Chr1 15362565 15373857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01922 37 674 MAP Kinase Kinase Kinase AT5G03730 57.035 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre1g01922 PK_Tyr_Ser-Thr 4.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01922 K14510 - gmx:100807496 1096.65