Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01913 ATGGAAGCAGAAATGGTTGAAGAAGATATTGTTAGGCCAATGAGTGAAGGAAGGAAGAGTAGGAGTTTCGGAGAGTTAATCCGGAATTCAGCAAATGAAGAGGAGGAGGAGCTGAAATGGGAAGCTTTATGGAGGCTTCCAACATATGATAGAATGAGAAAAGGAATTTTGAAGCAAGTTCTTGATAATGGAAAAGTTAACTATCAAGAAGTTGATATTACCAAGCTTGGTGTAGAAGAAAAGAAACTTCTTCTTGAAAGCATAATTAAGACTGCTGAAGAAGACAATGAGAATTTTCTACACAAAATGAGAGACAGAATAGATAGGGTAGGAATTGAGATTCCGAAGATTGAAGTTCGGTTTGAGAATTTATCAGTTGAAGGGGATGCATATGATGGAACCAGGGCCTTGCCAACACTAATCAATGCTACCTTGAATGTAATAGAGGGACTTTTGAGTTACATCAAGATTTTGGCATTTAAGAAAAGGGTTATAAGGATTCTCAAAGATGTTAGTGGAATTGTAAAACCATCAAGAATGACTTTATTATTGGGACCTCCAGGTTCGGGAAAAACTACGCTGCTTCAGGCATTGGCCGGGAAAATGGACAAGGATCTAAGGGTATCAGGAAGAGTTACTTACAATGGTCATGAATTTTCAGAATTTTTTCCTCAAAGAACATGTGCTTATATTAGTCAGCATGATCTTCACCATGGAGAAATGACAGTGAGAGAGACGCTGGACTTCTCCGGACGCTGCTTAGGTGTTGGAACAAGGTATGATATGTTAACAGAATTGTCGAGACGAGAAAAAGCAGCAGGTATCACACCAGATCCTGAAATAGATGCTTTCATGAAAGTCACATCAATGGAAGGTCAAGAAACAAGTCTTGTTACAGATTATATTCTCAAGATTCTAGGCCTGGAAACATGTGCTGATATTTTGGTGGGAGATGAAATGCGAAGAGGCATATCTGGTGGACAAAAGAAGCGTTTAACCACCGGTGAGATGTTAGTGGGACCTGCAAAAGCCTTATTTATGGATGGAATTTCAACTGGTTTGGATAGTTCGACAACCTTCCAAATAGTGAGGTTTATGAGGCAGATGGTTCATATAATGGATGTTACTATGATAATATCACTTCTGCAACCTGCACCAGAAACATATAATCTTTTCGACGACATAGTACTACTTTCAGAAGGTGAGATTGTCTATCAAGGTCCACGTGAGAGTGTTCTAGATTTTTTTCAAAGTGTCGGCTTCAAGTGCCCAGAAAGGAAAGGAATTGCAGACTTTTTACAAGAGGTAACTTCTAGAAAGGATCAAGAACAGTACTGGTTCAGAAGGGACATACCTTATCAGTATGTTAGTGTGCCTGATTTCGTAACACACTTCAACAATTACAGCATTGGTAAACAACTTCACGAAGAGATTCAAGTTCCGTTTGATTCTAGTAAAACTCATCATGCTGCATTAGTGAAGGAAAAGTATGGAATTACCAAATGGGAACTTTTCAAGGCATGCTTTTCAAGTGAATGGCTATTCATGAAGCGAAGCTATTTTGTATATATATTTAAGACTTTTCAAATTACTATCATGTCTTTAATTACCATGAGCGTATTTTTTCGAACAAAGATGGAGCACGGTAAACTTGAGGATGGAGGAAAATTTTATGGCGCACTATTTTTCAGCCTTGTTAATGTGATGTTCAATGGAGTAGCAGAACTTGCAATGACTGTTAACAGACTTCCTGTTTTCTTCAAGCAGCGAGATTTCTTATTTTATCCCGCATGGACTTTTGCATTGCCCATTTGGGTCCTCAGAGTTCCTATGTCTCTATTGGAATCAGGATTATGGACCATCCTCACTTATTATACTATTGGTTTTGCTCCAGCACCTAGTAGGTTTTTCCGACAACTATTGGCATACTTCTGGGTGAATCAAATGGCGCTATCCCTTTTCCGCTTCATTGCTGCAATTGGAAGGACAAGAGTTGTGTCTAACACACTTGCTTCCATAACAATATTAGTTGTTTTCGTCTTAAGTGGATTTACTGTTTCAAGAGATGATATTGGACCATGGATGATATGGTGCTACTATGCTTCACCTATGATGTACGGAATGACTGCAATAACCATCAATGAATTTCTCGACGAAAGATGGAGTGCTCCTAATATCGACCCTAGAATTGATGAACCTACAGTCGGGAAGGCTTTACTTAAGGCCAGAGGCATATTTACAGATGACTATTGGTATTGGATATCTATTGGTGCTCTTATAGGATTTTCTCTACTGTTCAATGTGTGTTTCATTCTCGCTCTAACTTACTTGGACCCATTCGGAAGCTCCAAATCTATCATAGTTGAAGAGGAAGACAATAGGAAAAACACAACGACCTCACCGGAAAAAACATCAGGAGAAATGAAAGAAATCTCAGCTACAAATGTTGAATCCTTTGAAGGTGCAGACATGGAAGTAAAAAACAAAACACATAGCTCAATTCCTAAAGCTGCAAAGAATGCAAAATTCAAGAAGGGAATGGTGTTGCCCTTTCAGCCTCTGTCACTTGTTTTCGAAAATGTGAATTATTATATCGATATGCCAAATGAAATGAAGCAAGGAACTAAAGAGGATAGACTCCAACTACTAAGAGACATAAGTGGTGCGTTTAGGCCTGGAATTTTAACAGCATTAGTTGGTGTAAGCGGTGCTGGAAAAACGACTTTGATGGATGTACTTTCAGGAAGGAAAACTAGTGGTTACATTGAAGGAGGTATCAGCATATCGGGTTATCCTAAGAACCAAGCAACATTTGCTCGGATTAGTGGTTATTGTGAACAAAATGATATTCATTCTCCAAATATTACAGTTTATGAATCTCTTCTGTTTTCTGCTTGGCTGCGGCTCGGTAAAGAGGTTGATATTGAAACACGAAAGATGTTTATCGAGGAAGTTATAGAGCTAGTTGAGTTACATCTAGTGAGAAATTTCTTAGTCGGCCTTCCTGGAATAGACGGCTTATCAACCGAGCAGAGAAAGAGGCTTACCATTGCCGTAGAATTGGTTGCAAATCCTTCCATTATCTTTATGGATGAACCAACAACTGGTCTTGATGCTAGAGCTGCAGCAGTTGTTATGCGTACCGTTAGAAACACAGTCGATACAGGAAGAACTGTTGTGTGCACAATTCATCAACCAAGTATAGATATATTTGAAAATTTTGATGAGCTGCTTTTGATGAAGACGGGTGGACAAGTGATATACGGTGGTCCTCTAGGTCGAAATTCTGATAAACTTATCGAGTACTTTGAGGCAATTACAGGAATTCCAAAGATCGAAAATGGATATAATCCAGCCACATGGATGCTGGATATCAGTTCTCCTGTGGTCGAGTCTCAGCTTAATATAGATTTCGCTGAATTATACAATAAGTCAAGCCTTTACGAACGGAACCAAGAACTTATCAAGGAACTATCGATACCAGCACCTGGAACAAAGGAGCTTTACTTTCCATCTAAATACTCGCAATCATTTGTTACACAATGCATTGCTTGCTTCTGGAAACAATACTGCTCCTATTGGAGAACTCCACAGTATAATGGCGTCAAATACTTCGTCACAATAGTCATTGGTGTTTTGTTTGGACTAATTTATTGGAAAAAAGGCGATAAGTTGGAAAAGGAACAAGACCTTTTAAATCTCATTGGAGCTATGTATTCATCTGTCATTTTCCTCGGTGCATCGAACACTAGCAGTGTGCAACCTGTTAAGATAATAGAAAGAACAGTTCTCTACCGTGAAAGAGCGGCTGGATTGTACTCAGAACTACCGTACGCAATTGGTCAGGTTGCAATTGAAATAATTTATGTTGCACTCCAAAGTCTGATATACTCTATTATCCTCTACTGGATGATTGGCTTCGAACCACAAGTTGAAAATTTCTTTTGGTTCTACTTCTTCATATTCATGTCCTTTATCTACTTCACATTATATGGAATGATGACAGTGGCTCTAACACCAAACCACCAAATAGCTGCAATTGTGATGTCTTTCTTCCTCAGCTTTTGGAACCTGTTTTCTGGTTTTCTCATTCCAAGAACGCAAATTCCGATATGGTGGAGGTGGTATTATTGGGCATCACCTGTGGCATGGACTATATATGGACTGGTGACATCCCAGGTGGGTGACAATAACAATCCAATAGAGGTTCCTGGATACAGGCTGATGACAGTAAAAGATTATCTTGAGAGGCAATTGGGATTTGAATATGACTTTCTTGGATTTGTTGCTTTGGCTCATATTGCATTTTGCCTTCTTTTCCTTTTTGTATTTGCCTATGGCATCAAGTTTCTAAACTTCCAGAAAAGATAA 4371 0.3894 MEAEMVEEDIVRPMSEGRKSRSFGELIRNSANEEEEELKWEALWRLPTYDRMRKGILKQVLDNGKVNYQEVDITKLGVEEKKLLLESIIKTAEEDNENFLHKMRDRIDRVGIEIPKIEVRFENLSVEGDAYDGTRALPTLINATLNVIEGLLSYIKILAFKKRVIRILKDVSGIVKPSRMTLLLGPPGSGKTTLLQALAGKMDKDLRVSGRVTYNGHEFSEFFPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYDMLTELSRREKAAGITPDPEIDAFMKVTSMEGQETSLVTDYILKILGLETCADILVGDEMRRGISGGQKKRLTTGEMLVGPAKALFMDGISTGLDSSTTFQIVRFMRQMVHIMDVTMIISLLQPAPETYNLFDDIVLLSEGEIVYQGPRESVLDFFQSVGFKCPERKGIADFLQEVTSRKDQEQYWFRRDIPYQYVSVPDFVTHFNNYSIGKQLHEEIQVPFDSSKTHHAALVKEKYGITKWELFKACFSSEWLFMKRSYFVYIFKTFQITIMSLITMSVFFRTKMEHGKLEDGGKFYGALFFSLVNVMFNGVAELAMTVNRLPVFFKQRDFLFYPAWTFALPIWVLRVPMSLLESGLWTILTYYTIGFAPAPSRFFRQLLAYFWVNQMALSLFRFIAAIGRTRVVSNTLASITILVVFVLSGFTVSRDDIGPWMIWCYYASPMMYGMTAITINEFLDERWSAPNIDPRIDEPTVGKALLKARGIFTDDYWYWISIGALIGFSLLFNVCFILALTYLDPFGSSKSIIVEEEDNRKNTTTSPEKTSGEMKEISATNVESFEGADMEVKNKTHSSIPKAAKNAKFKKGMVLPFQPLSLVFENVNYYIDMPNEMKQGTKEDRLQLLRDISGAFRPGILTALVGVSGAGKTTLMDVLSGRKTSGYIEGGISISGYPKNQATFARISGYCEQNDIHSPNITVYESLLFSAWLRLGKEVDIETRKMFIEEVIELVELHLVRNFLVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFENFDELLLMKTGGQVIYGGPLGRNSDKLIEYFEAITGIPKIENGYNPATWMLDISSPVVESQLNIDFAELYNKSSLYERNQELIKELSIPAPGTKELYFPSKYSQSFVTQCIACFWKQYCSYWRTPQYNGVKYFVTIVIGVLFGLIYWKKGDKLEKEQDLLNLIGAMYSSVIFLGASNTSSVQPVKIIERTVLYRERAAGLYSELPYAIGQVAIEIIYVALQSLIYSIILYWMIGFEPQVENFFWFYFFIFMSFIYFTLYGMMTVALTPNHQIAAIVMSFFLSFWNLFSGFLIPRTQIPIWWRWYYWASPVAWTIYGLVTSQVGDNNNPIEVPGYRLMTVKDYLERQLGFEYDFLGFVALAHIAFCLLFLFVFAYGIKFLNFQKR 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01913 1456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 205 IPR027417 -
Trre1g01913 1456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 424 IPR027417 -
Trre1g01913 1456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 878 1091 IPR027417 -
Trre1g01913 1456 SMART AAA_5 177 402 IPR003593 GO:0016887
Trre1g01913 1456 SMART AAA_5 892 1084 IPR003593 GO:0016887
Trre1g01913 1456 Gene3D - 858 1102 IPR027417 -
Trre1g01913 1456 Gene3D - 158 452 IPR027417 -
Trre1g01913 1456 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 29 1456 - -
Trre1g01913 1456 FunFam ABC transporter G family member 34 155 459 - -
Trre1g01913 1456 CDD ABCG_PDR_domain1 155 407 IPR034001 -
Trre1g01913 1456 Pfam ABC-2 type transporter 1180 1392 IPR013525 GO:0016020|GO:0140359
Trre1g01913 1456 Pfam ABC-2 type transporter 504 716 IPR013525 GO:0016020|GO:0140359
Trre1g01913 1456 Pfam ABC transporter 883 1034 IPR003439 GO:0005524
Trre1g01913 1456 CDD ABCG_PDR_domain2 853 1090 IPR034003 -
Trre1g01913 1456 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 856 1107 IPR003439 GO:0005524
Trre1g01913 1456 MobiDBLite consensus disorder prediction 791 810 - -
Trre1g01913 1456 Pfam ABC-2 type transporter 383 438 IPR043926 GO:0140359
Trre1g01913 1456 Pfam ABC-2 type transporter 1064 1136 IPR043926 GO:0140359
Trre1g01913 1456 Pfam Plant PDR ABC transporter associated 729 787 IPR013581 -
Trre1g01913 1456 FunFam ABC transporter G family member 40 870 1099 - -
Trre1g01913 1456 Pfam ABC transporter 168 348 IPR003439 GO:0005524
Trre1g01913 1456 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 152 425 IPR003439 GO:0005524
Trre1g01913 1456 Pfam ABC-transporter N-terminal 92 143 IPR029481 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01913 Trre-Chr1 15295253 15307314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01913 880 1067 Calmodulin-binding Proteins AT2G36910 28.571 1.98e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01913 K08711 - gmx:100788067 2390.92