Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01910 ATGTCTGAAACACGTTGGTCTGGTGATAATATTACTAGAGAGAATGCAAGGCAAAAGCGCAAGATGGAGGAAAGAGTTGGTGTTGATTCAGAGGTGTCAGTGTCTCTGTCTCTGAGTCTAGGAGGTGGAAGAGGAGAAAGAGGAGAAGAAGGATCTTCATTCAAATTCCTCAAGAGCCACGAGGAGCAGAGAGAATATCCCTGTAAGTTTTGCAACAAAAAATTTTCAAATTCTCAAGCCTTAGGAGGGCACCAGAACGCCCATAGGCGTGAAAGGGTCCTTTTAAAAATGGAAAAAGAAATTCAAATGGGAACTTATGGACTTGGTGCTCTATGTCCATACTCAAACCATAATTATCATCATCAACATCCATTCACTACTGCAGGGTCCACATCTTTTTACCATGGAATTGGATGGCCCCATCTTGCTGCACCTATGGGCTATGGTAACCCATTTGGGATGATCAACAACTCTTCTTTAGCTCCTCAAATTCCTATGAATAATTATAATAATAATAATAATATGGGATTTGGAAATTTTGAACTTAATAATCAGCTGCAGGTTCCTTCATTTGGTGCTGCTCTTGGTAGTCCTTTTCTGCATGGAAACAACAATGACAATGTTCAGAATAACCACCATGTTTCATCATCACCCCGCTGA 660 0.4061 MSETRWSGDNITRENARQKRKMEERVGVDSEVSVSLSLSLGGGRGERGEEGSSFKFLKSHEEQREYPCKFCNKKFSNSQALGGHQNAHRRERVLLKMEKEIQMGTYGLGALCPYSNHNYHHQHPFTTAGSTSFYHGIGWPHLAAPMGYGNPFGMINNSSLAPQIPMNNYNNNNNMGFGNFELNNQLQVPSFGAALGSPFLHGNNNDNVQNNHHVSSSPR 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01910 219 MobiDBLite consensus disorder prediction 1 26 - -
Trre1g01910 219 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Trre1g01910 219 Gene3D Classic Zinc Finger 51 105 - -
Trre1g01910 219 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 55 180 IPR044246 GO:0009788
Trre1g01910 219 SUPERFAMILY beta-beta-alpha zinc fingers 63 93 IPR036236 -
Trre1g01910 219 MobiDBLite consensus disorder prediction 10 26 - -
Trre1g01910 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01910 Trre-Chr1 15275528 15276187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01910 62 141 C2H2 Transcription Factor Family AT1G67030 43.210 2.95e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g01910 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01910 - - tpra:123904723 213.772