Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01908 ATGGTATTAGGCCAGTTAGGATATACTTTATTGTATTTTGTCACTGAAGCTTCCTTCAATCATGGAATGAGTCCTTATGTGTATGTTACCTATCGTCATGTTGTAGCTGGCTTTGTCATGTTTCCTTTTGCATACTTTCTAGAGAGAAATGTAAGACCAAAGCTGACTTTTGCACTTTTTATGGAATTTTTTGTGCTTTTAGTGTTAGGGGTCAGTTTGACTCTGAATATGTACTTTACAAGCTTGAAGTACACTTCTCCAACCTTTATTTCTTCCATGGTGAACAGCATAGCTGCCCTTACCTTCATTATTGCAGTGGCACTCAGGTTTGAGGTTCTAGATCTTGGAAATCCTCGTGGTATAGCAAAAGTCCTTGGTACCATAATCTCCTTAGCTGGTGTTATGACAATGACACTATACAAAGGACCTACTATGAGCAATTTATGGCGTCCTCTAATAAATATTCAACCGGTAAATGCTTCTGTCGATGAGAAGAGCGAGTTAAAGGGCTCACTTCTTACGGTTTTATGCTGTGTTACATGGTCTATATCGTTCATTATGCAGGCATCGACATTAAAAAGATACCCTGCTCAATTATCGCTCACTACATGGATGTGCTTCATTGGAGCAGCACAATCAGCTGTTTTCACAGTGATAGCAGAACGTAATAACCCTTCAGCATGGATTATAGGGCTAAACATTGAATTGTGGTCAACAATATATGGGGGAATCGTTGTTAGCGGTTTGTTGACATACATTCAACTATGGTGCACGGAGAAAAAAGGACCAGTTTTTGTTACATTGTTTAACCCTCTCAGTACCATATTTGTGGCAATTCTAGCATACTCAGTCCTTGGTGAAAAACTTTATTTGGGCAGCATCATAGGTGCATTTATTGTCATCATGGGTTTGTACTTGTTGCTGTGGGGGAAAGAATGTGACATAGAGGTTGATTTCAAGACCAAAGATAAATTGCAGTGTTATAGTGAAGACCCAAAATGCAGAATATAG 1011 0.3897 MVLGQLGYTLLYFVTEASFNHGMSPYVYVTYRHVVAGFVMFPFAYFLERNVRPKLTFALFMEFFVLLVLGVSLTLNMYFTSLKYTSPTFISSMVNSIAALTFIIAVALRFEVLDLGNPRGIAKVLGTIISLAGVMTMTLYKGPTMSNLWRPLINIQPVNASVDEKSELKGSLLTVLCCVTWSISFIMQASTLKRYPAQLSLTTWMCFIGAAQSAVFTVIAERNNPSAWIIGLNIELWSTIYGGIVVSGLLTYIQLWCTEKKGPVFVTLFNPLSTIFVAILAYSVLGEKLYLGSIIGAFIVIMGLYLLLWGKECDIEVDFKTKDKLQCYSEDPKCRI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01908 336 SUPERFAMILY Multidrug resistance efflux transporter EmrE 31 141 - -
Trre1g01908 336 PANTHER WAT1-RELATED PROTEIN 1 313 IPR030184 GO:0016020|GO:0022857
Trre1g01908 336 Pfam EamA-like transporter family 169 308 IPR000620 GO:0016020
Trre1g01908 336 Pfam EamA-like transporter family 13 137 IPR000620 GO:0016020
Trre1g01908 336 SUPERFAMILY Multidrug resistance efflux transporter EmrE 204 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01908 Trre-Chr1 15265540 15267668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01908 1 330 Nodulin-like Gene Family AT5G07050 42.478 1.41e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01908 - - gmx:100527877 527.709