Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01907 ATGGAGCAAAAAGTATTTTCATCTTTGCTTGTATACAAACATTTCAAACCACATTTGATCATGGTATTAGGCCAGTTAGGATATACTTTATTGTATTTTGTCACTGAAGCTTCCTTCAATCATGGAATGAGTCCTTATGTGTATGTTACCTATCGTCATGTTGTAGCTGGCTTTGTCATGTTTCCTTTTGCATACTTTCTAGAGAGAAATGTAAGACCAAAGCTGACTTTTGCACTTTTTATGGAATTTTTTGTGCTTTTAGTGTTAGGGGTCAGTTTGACTCTGAATATGTACTTTACAAGCTTGAAGTACACTTCTCCAACCTTTATTTCTTCCATGGTGAACAGCATAGCTGCCCTTACCTTCATTATTGCAGTGGCACTCAGGTTTGAGGTTCTAGATCTTGGAAATCCTCGTGGTATAGCAAAAGTCCTTGGTACCATAATCTCCTTAGCTGGTGTTATGACAATGACACTATACAAAGGACCTACTATGAGCAATTTATGGCGTCCTCTAATAAATATTCAACCGGTAAATGCTTCTGTCGATGAGAAGAGCGAGTTAAAGGGCTCACTTCTTACGGTTTTATGCTGTGTTACATGGTCTATATCGTTCATTATGCAGGCATCGACATTAAAAAGATACCCTGCTCAATTATCGCTCACTACATGGATGTGCTTCATTGGAGCAGCACAATCAGCTGTTTTCACAGTGATAGCAGAACGTAATAACCCTTCAGCATGGATTATAGGGCTAAACATTGAATTGTGGTCAACAATATATGGGGGAATCGTTGTTAGCGGTTTGTTGACATACATTCAACTATGGTGCACGGAGAAAAAAGGACCAGTTTTTGTTACATTGTTTAACCCTCTCAGTACCATATTTGTGGCAATTCTAGCATACTCAGTCCTTGGTGAAAAACTTTATTTGGGCAGCATCATAGGTGCATTTATTGTCATCATGGGTTTGTACTTGTTGCTGTGGGGGAAAGAATGTGACATAGAGGTTGATTTCAAGACCAAAGATAAATTGCAGTGTTATAGTGAAGACCCAAAATGCAGAATATAG 1071 0.3847 MEQKVFSSLLVYKHFKPHLIMVLGQLGYTLLYFVTEASFNHGMSPYVYVTYRHVVAGFVMFPFAYFLERNVRPKLTFALFMEFFVLLVLGVSLTLNMYFTSLKYTSPTFISSMVNSIAALTFIIAVALRFEVLDLGNPRGIAKVLGTIISLAGVMTMTLYKGPTMSNLWRPLINIQPVNASVDEKSELKGSLLTVLCCVTWSISFIMQASTLKRYPAQLSLTTWMCFIGAAQSAVFTVIAERNNPSAWIIGLNIELWSTIYGGIVVSGLLTYIQLWCTEKKGPVFVTLFNPLSTIFVAILAYSVLGEKLYLGSIIGAFIVIMGLYLLLWGKECDIEVDFKTKDKLQCYSEDPKCRI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01907 356 Pfam EamA-like transporter family 189 328 IPR000620 GO:0016020
Trre1g01907 356 Pfam EamA-like transporter family 33 157 IPR000620 GO:0016020
Trre1g01907 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
Trre1g01907 356 PANTHER WAT1-RELATED PROTEIN 17 333 IPR030184 GO:0016020|GO:0022857
Trre1g01907 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 224 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01907 Trre-Chr1 15265540 15267728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01907 16 350 Nodulin-like Gene Family AT5G07050 42.442 2.74e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01907 - - gmx:100527877 547.354