Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01906 ATGGAAAACGAACTCGATTGGGAATGTTTCTTCGATCAGTTACCAGACTTTGAACAAGTCGCCGATTTTTTTCAGGAGGATGTAATCAATCCACCTGTTTCCATCGCTGACACTCCCTCGCCGATTTCCGCGCTATCAGAGATTGAGAATTTGCTCATGACTGATTCCAACGAGGGAATTGCGTCGCCGGAGGATTCCGACTATGATAAGCTTCTGGCTGAGATTCTCATTGAGCCGCTCCCTGAATCCGAGGAAGGTTCGGTTGTTCCTTCTGATAAAGACGGAGTTGATTCATCATCTCCTGAAGAGGTTACTTCTCATAAAGACGGTGTTGATCCATCAACTCCTGAAGAGGTTCCTCCTGAATCTGTGTCGAAGAAGCAAATAAGGCAGATGAGGAACAGGGATGCTGCTGTGAAATCAAGAGAGAGGAAGAAGATGTATGTGAAAAACCTTGAGACAAAGAGTAGGTATTTTGAAGGGGAATGCAGAAGATTGGAGCATTTGCTCCAGTGCTGCTATGCTGAGAACCATGCTTTGCGGTTTTGTTTGCAATCGCGTGGTGCATTTGGTGCTCCCATGACCATGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGCTGGGTTCCCTGCTATGGTTCATGGGCATCATGTGGCAACTCAGTCTACCCCTCCTACTGTGGCTAACAGTGTCACCTCCAAGAGAAAACATGGAACACAAAGGTCTAAGAAAGGTGACTCTAAAAGGGCCAAACAGTAATATATCTGAATATTTCCTGACTCAATCATTTGTAAAAAGTAGAAGATGCCAAGCTTCAAGAACAAAGATGAAATTTGATTTTACCGTGTTCTAA 858 0.4499 MENELDWECFFDQLPDFEQVADFFQEDVINPPVSIADTPSPISALSEIENLLMTDSNEGIASPEDSDYDKLLAEILIEPLPESEEGSVVPSDKDGVDSSSPEEVTSHKDGVDPSTPEEVPPESVSKKQIRQMRNRDAAVKSRERKKMYVKNLETKSRYFEGECRRLEHLLQCCYAENHALRFCLQSRGAFGAPMTMQESAVLLLESLLLGSLLWFMGIMWQLSLPLLLWLTVSPPRENMEHKGLRKVTLKGPNSNISEYFLTQSFVKSRRCQASRTKMKFDFTVF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01906 285 MobiDBLite consensus disorder prediction 128 142 - -
Trre1g01906 285 CDD bZIP_HY5-like 127 178 - -
Trre1g01906 285 MobiDBLite consensus disorder prediction 82 142 - -
Trre1g01906 285 Pfam bZIP transcription factor 125 168 IPR004827 GO:0003700|GO:0006355
Trre1g01906 285 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 124 167 IPR004827 GO:0003700|GO:0006355
Trre1g01906 285 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 2 248 - -
Trre1g01906 285 SUPERFAMILY Leucine zipper domain 126 184 IPR046347 GO:0003700|GO:0006355
Trre1g01906 285 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 130 144 IPR004827 GO:0003700|GO:0006355
Trre1g01906 285 Gene3D - 125 185 - -
Trre1g01906 285 SMART brlzneu 122 186 IPR004827 GO:0003700|GO:0006355
Trre1g01906 285 MobiDBLite consensus disorder prediction 87 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01906 Trre-Chr1 15260802 15263978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01906 40 280 bZIP Transcription Factor Family AT1G42990 39.847 1.35e-17 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre1g01906 bZIP_1 5.8e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01906 - - pvu:PHAVU_007G247600g 271.166