Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01901 ATGGAAGTTCTAATTTGCGTTGTTGAAAAAGTAGCAGAATATACTATTGTGCCTATTGGACGTCAAGCAGGTTACTTGATATTCTACAAAGACAATTTTAAGATGTTGGCAGATCATGTCAAAGAGCTCCAATCTGCAAGAGAAAGAGTGTCTCATTCAGTTGAAGAAGAAAGGGGAAAGGGTAAAGAAATCGAAACAGATGTGATGGACTGGTTGAAGAAAGTGAACGAGGTAATTGAAACAGCAAATAAGCTTGAACAAGATCCTCGTCGTGCCAATGTCAGATGCACAACATGGGGGTTTCCCAATTTGATTTCGCGTCATCAGCTAAGTAGGAAAGCCATAAAAACTGCACACGATGTTGTCCAAGTTCAAGGAAAAGGGACATTTGATCGAGTTGGTTACCTTCCAACCTTAGATGTAGTAGCCTCCTCGTCCTCAACAAGAGGTACTGAAATTTATGAGACAAGGGAGTTACTTAAGGAGAATATTGTGAAGGCACTGTCAGACCTCAATTCATGCAACATTGGGGTCTATGGTTTGGGTGGGGTGGGTAAGACCACTCTAGTGGAAGATGTTGCTCTAATAGCAAAGCAACATAAATTGTTCGATAAAGTGGTTATAACAAATGTATCCGAAAATCCTGACATTAAAACCATTCAAGGGGAGATTGCAGATTCGTTGGGTTTGCAATTCAATGAGGAGACAATTTTCGGAAGAGCAAATCGCCTAAGACAAAGAATCAAGATGGAGGAAAAAATCCTTGTCATTCTAGATAATATATGGAGCATGCTTGATTTGAAGAAAGTGGGAATCCCAATTGGTAATGAACATAATGGTTGCAAACTATTGATGACAAGTAGAAATCAAGATGTGTTGCTGCAAATGGATGTTCCAATGGATTTCATTTTCAAGCTTGAACTTATGAGTGAAATCGAGACATGGAAGTTGTTTCAATTTATGGCTGGAGATGTGGTTAAAGATAGCAGTTTGAAAGATGTAGCAATTCAAGTTGCCCAAAAATGTGAAGGTTCGCCTCTTAGGATAGTGACAGTGGCACGTGCAATGAGAAATAAGAGAGACATTCAGTCTTGGAAAGAGGCGTTAAGGAAATTACAGTGTAATGATCATACAGAGATGGACGCGTTAACTTATTCTGCTTTGGAATTGAGTTACAACTCATTGGAGAGTGATGAAATGAGGGATCTCTTCTTGCTTTTTGCATTAATGGAAGGTAACAATGCAGAGTACTTTCTGAAAGTTGCAATGGGTTTGAACATATTAAAGCATGTTAATACCATTGATGAGGCAAGAAACAAACTTTACACAATAATCAGATCTTTGGAGGTGACTTGTCTTCTGCTTGATGTTAAAAAAGTTGGGAATATCAGAATGCATGATTTTGTTCGTGATTTTGCTACCTCCATATCACGTAGGGACAAACATGTATTTCTAAGAAAACAATCTTATGAGGAATTACCAACCAATGCCTTTTTAAACAGGTGCATGCAGATTGTTCTACAATGGTGTCATATCCACGAACTTCCTCAAACGATTGTCTGTCAAAACATTAAGTTGTTCACTTTGTATAGTAAGAACCGATCTTTAAAGATCCCAGATACTTTTTTTGAAGGGATGAGCAGCCTTAAAGTGCTAGATTTAACATCTCTTAACTTGTCTTCATTACCAACCTCATTTTGGTTCCTAACCGACCTTAAAACGTTGTGTTTGGATTTATGCGTTTTGGAAAATATGGATGCAATTGAAGGTCTGCAAAATTTAGAAATTCTTCGCATCTGGAAATCATCTATGACCAAGTTCCCAAGAGAAGTAGGGAGATTGACTCAATTGAGAATGCTTGATTTGAGCAATTCAGGAATTGAAGTACTCCCATCCAACATCATATCAAGTTTAATTAATTTGCAGGAGTTGTACATGGGCAATACCTCTATTAATTGGAAAGATGTGAATTCAACGGTTCAAAATGGAAATGCTAGCCTTGCCGAGCTTCAGAAACTACCCAACTTGACTGCTCTGGAATTACAAATTCGAGAGACTTGGATGTTGCCAAGGGACATGCAATTGATGTTTGAGAAGCTTAATTTTTTTAAAATTGCTATCGGAGATGTATGGGAATGGGCAGACATTGAAGATGGAACCTTAAAAACATTGATGCTCAAACTTGGTACCAACATACATTTGGAGCACGGAATTAAAGCATTGATTAAAGGTGTTGAGAATTTGTACTTGGATGATGTTGATGGAATTCAAAATGTGCTTTATCAACTAAATGGGGAAGGATTTCCATTGCTGAAACATCTTCACGTCCAAAGTAATGCAAACTTGAAGCACATTGTTGACTCTAAAGAGAGGAATCAAATCCAGGCGTCCTTTCCCATCTTGGAAACACTAGTACTTCACAATCTTAAAAACTTGGAGAATATATGTCATGGTCCACTTTCAATTACTTCTTTTGGAAGTCTCAGTGTTATCAAAATAAAAAATTGCGTCCAATTAAAATATCTTTTCTCCTATACGTTGGTTAAAGAACTTTCCCACCTTTCAGAAATTGAAGTCTGCCACTGCAATTATATGAAGAAGATTGTGCTCAAAGACAACAATTCAAGTGCAAATAATGATATAGATAATGAAAAAATTGATTTCCTTCTATTGCGTTCTTTGACTTTAGAACATTTGGAGACAATTGATGATTTCTTCTCTTATCATTCGACGAATTCCAGAAGTAAGCAAAAATATCATGGTTTAGAGCCTGCTGTTTCTGCCCCATTTTTCAATGCTCAGGTTGCATTTCCTAAATTGGATACCCTCAAATTGAGCTCACTCCTCAATTTGAATAAAATTTGGGATGACAATTATGATTCAATGTACAACTTGACTAGCTTGATTGTGGATAATTGTGGCGGCTTGAAATACTTATTCTCATCTACTGTGGTTGGAACTTTTAAGAACCTCAAACACCTTGAAATAAGTAATTGTGCTATGATGGAGGAGATTATAGCTAAAGAAGGGGGAAACAGTGCATCAGAAGAGGTTCATTTTGGCAAATTAGAGAAAATCATATTGAAGGACATGGACAACTTGAAGACAATATGGCACCACCAATTTGAAACATTGAAGAAGTTGCAAGTGAACAGTTGTAATAAAATTGTGGTGGTTTTTCCCTCTTCAATGCAAAAAACATATAATAAGCTAGAGATGTTGGAGGTTACAAATTGTGGTTTAGTGGAAAAAATATTTGAATTGAGCTTCAAAGAAAGTAGCAGTGTAGAAGATACAACACATTTGACAGAAGTTACTATGGATGAATTGCCAAAGCTGAAAAAGTTATGGAGTAGGGATCCTCATGGAATTCTTAGTTTTCAAAATCTAATAAATATAAAAGTAAAAAGTTGTGAGAGTTTGGAGTATCTATTACCACTTTCCGTAGCCACTCATTGCTCACATCTCAAGGAACTTCATATAGATGAATGTGAGAACATGAAGGGAATTGTTGCAGAGGAGAAAGAATCTAGCAACGTGAATGCAGCTCCCATATTTGAGTTTAATCAACTGAGTTCTTTATTGCTTTGGAACTTAACTAAACTCAAGGGTTTCTCTGCTAAAAAGCATACCCTAGCATGTCCATCTTTGAAGATAATTGATGTTTTCAATTGTCCAAAGTTGACTTTCTTTAGAACTCTATCTACAAGAAGAAGATCCAATACTGAAGATGACAAACACTCTGTTTCAACGCAACAACCAATTTTCATTGTCGAAGAGGTGATTCCAAATTTAGAGAAGTTGAGAATAACTCATAAGGAAGCTAACATGATACTGCAAGCCCAAAACTCAAGTGGCCTATTCACAAAAATGACATTTCTTGGTTTGTATGATAATAAGGACGAAGATACATTTCCTTATTGGTTTCTTCAAAATGTGCGTGGTCTTGAAAAACTAGTTATTGAACAGAGTTGCTTCAAGAAGATATTTCAAGATGAAGTAAGAATGAGTGAGAAGACTCACACACAAATCAAAAGCTTGACATTGTATTCATTACCTAACCTTGAACATATATGTGACGAAGGATTTCGAATTGACTCAGTTCTTGAGTTGCTTGAATACTTATGGGTTGAGAGTTGTCCTAGTCTGATAAATTTGCTGCCTTCCTCAGTCACCTTTACCCATTTGGTACAGTTAGAGATAAAAGATTGCAATGGGCTAACAAAATTAATTACATCTTCTACTGCACAAAGTTTGATCAAGCTCACAACACTAAAGATAAAAGACTGTAATTCACTTGAAGAAATAATTCTTGGAGAGGAAAATGTTCACCTTACATTTATTAGTTTACAAATGTTGATGTTGGAATGTTTGCCTAGCCTCAATCAATTTTGCTCTAGTAAATGTTTCTTCAAATTTCCGTTGTTGGAAGTAGTAATTGTGCGAGAATGTCCTCGCATGAAGGTTTTTTCTGAAGGATACACAAGTACACCAAATCTTCGGAAAGTTAAAATTGCAGAAAATGATGAAGAATGGTTTTGGAAGGGAAACCTAAATGATACAATAAAAACCATGTTTGAAGATAAGGTTGCATTTGGTAAATTCAAATATTTGGCCTTATCGGACTACCCTGAGATGAAGGATTTGTGGTATGGTCAACTTGATCATCAAAATGTATTTTGCAATTTGAAACATCTAGTGGTGAACAGATGTGATTTTTTATCACATGTACTTTTTCCATCAAATGTAATGCAAGTGCTATATGGATTGGAAGAACTAGAAGTAATAGATTGTGATTCATTAGAAGCCGTGTTTGATGTGAAAGGTGTGAAGTCTGCAGAAGAAATATTGATAAAACAAAGCACTCAATTGAAAAATTTGACTTTGTCTAGTTTACCAAATTTGAAGCACATATGGAATGAGGATCCTCATGATATTATAAACTTTGGAAACTTATGCACGTTGAATGTCTCTAAGTGTCAAAGTTTGTTATATATATTTCCATTGTCATTGTGTGAAGATCTTGGACATCTTGAAATGCTTGTGATAGAGTCTTGCGAAGTTGAGGAAATTGTTGCAATGGAAGAAGGATCAATGGAACATAGCTTTCATTTTCCTCAATTGAATAAATTGACATTGAGTCGTTTGACAAACCTTACGCGCTTCTATCAAGGAAAGCATTCTTTAGATTGCCCTTCATTAAAGGTATTGGATGTATATTATTGTGCCTTCGACCATTTGGACTTGTTTTCTATTGAAAAGGTAAATTTTACCCTAACTTGTTTTTCTTTATCTGTCTTTGTCATGATAACTTGTAGTTATTTTATTTTTGGATGTTTAATTTTTCAGCTGAGTCGCAACTTGGAGGAATTGACAATAAATGACACAGATTTGGTGGAGATATTGAATCAAGAAAATATCTTTCAAAAAGTTCAAACTCTTTATTTGCAATACTTCGATAAAACTCCTGCAGCCTTTTTGAATGAATATTCTCACACAATATTTCCTAATCTTAAAATGGTTCAAGTGCGTACTAGTTTCTTTGAAACATTGTTCCCCACTAATGGTTTTCTCGGTATGCAAATTTCAAAGCCAATAAAAACTTTGAAGCTTTTAGAATTGGAAATGCTCAAGCACATCTGGCAAGAAGACTTTCCATTGGACCATCCTTTGTTACAAGATCTTCATGAATTACATGTATGGAATTGTCCAAGTTTGATAAGCTTGGTACCATCGTCGACATCTTTCACAAATTTAACCATTTTGAGAGTGGTCAATTGCAAAGAGCTGAATTATTTGATAACATCTTCAACAGCTAAAAGCTTAATTCAACTCACAATATTAAGTATAAACAATTGTGAGAAGATGTTGGATGTTGTGAAGATTGATGATGAAAAAGCAGAGGAAGACATCATATTTAAAAACTTGGAAGACATGGTATTCATTTCTTTGTCAAGTTTGGGAAGCTTCTGCAATGGGAATCAAACATTCATATTCCCATCTTTGCTAATTCTCATGGTTGTAGAATGCCCTCAAATGAATATCTTCTCATCAGGAGTCACAGTAACACCATGTCTGAAAGAAATTTATGTTACAGGAGAAGGAACTTCTAGATGGAAAGGTGACATCAACACAACTATTCAACATTTATTCCTAGAAAAGGAAGTCCTACATTCTAATGCGTTGAATGAGACCATCATATCCTCACATTTGCAAGTTGATGAGCTAGGAGGTCAAGATGGCATTGCCACAGATCCTGAGGAGTGA 6267 0.3574 MEVLICVVEKVAEYTIVPIGRQAGYLIFYKDNFKMLADHVKELQSARERVSHSVEEERGKGKEIETDVMDWLKKVNEVIETANKLEQDPRRANVRCTTWGFPNLISRHQLSRKAIKTAHDVVQVQGKGTFDRVGYLPTLDVVASSSSTRGTEIYETRELLKENIVKALSDLNSCNIGVYGLGGVGKTTLVEDVALIAKQHKLFDKVVITNVSENPDIKTIQGEIADSLGLQFNEETIFGRANRLRQRIKMEEKILVILDNIWSMLDLKKVGIPIGNEHNGCKLLMTSRNQDVLLQMDVPMDFIFKLELMSEIETWKLFQFMAGDVVKDSSLKDVAIQVAQKCEGSPLRIVTVARAMRNKRDIQSWKEALRKLQCNDHTEMDALTYSALELSYNSLESDEMRDLFLLFALMEGNNAEYFLKVAMGLNILKHVNTIDEARNKLYTIIRSLEVTCLLLDVKKVGNIRMHDFVRDFATSISRRDKHVFLRKQSYEELPTNAFLNRCMQIVLQWCHIHELPQTIVCQNIKLFTLYSKNRSLKIPDTFFEGMSSLKVLDLTSLNLSSLPTSFWFLTDLKTLCLDLCVLENMDAIEGLQNLEILRIWKSSMTKFPREVGRLTQLRMLDLSNSGIEVLPSNIISSLINLQELYMGNTSINWKDVNSTVQNGNASLAELQKLPNLTALELQIRETWMLPRDMQLMFEKLNFFKIAIGDVWEWADIEDGTLKTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLYQLNGEGFPLLKHLHVQSNANLKHIVDSKERNQIQASFPILETLVLHNLKNLENICHGPLSITSFGSLSVIKIKNCVQLKYLFSYTLVKELSHLSEIEVCHCNYMKKIVLKDNNSSANNDIDNEKIDFLLLRSLTLEHLETIDDFFSYHSTNSRSKQKYHGLEPAVSAPFFNAQVAFPKLDTLKLSSLLNLNKIWDDNYDSMYNLTSLIVDNCGGLKYLFSSTVVGTFKNLKHLEISNCAMMEEIIAKEGGNSASEEVHFGKLEKIILKDMDNLKTIWHHQFETLKKLQVNSCNKIVVVFPSSMQKTYNKLEMLEVTNCGLVEKIFELSFKESSSVEDTTHLTEVTMDELPKLKKLWSRDPHGILSFQNLINIKVKSCESLEYLLPLSVATHCSHLKELHIDECENMKGIVAEEKESSNVNAAPIFEFNQLSSLLLWNLTKLKGFSAKKHTLACPSLKIIDVFNCPKLTFFRTLSTRRRSNTEDDKHSVSTQQPIFIVEEVIPNLEKLRITHKEANMILQAQNSSGLFTKMTFLGLYDNKDEDTFPYWFLQNVRGLEKLVIEQSCFKKIFQDEVRMSEKTHTQIKSLTLYSLPNLEHICDEGFRIDSVLELLEYLWVESCPSLINLLPSSVTFTHLVQLEIKDCNGLTKLITSSTAQSLIKLTTLKIKDCNSLEEIILGEENVHLTFISLQMLMLECLPSLNQFCSSKCFFKFPLLEVVIVRECPRMKVFSEGYTSTPNLRKVKIAENDEEWFWKGNLNDTIKTMFEDKVAFGKFKYLALSDYPEMKDLWYGQLDHQNVFCNLKHLVVNRCDFLSHVLFPSNVMQVLYGLEELEVIDCDSLEAVFDVKGVKSAEEILIKQSTQLKNLTLSSLPNLKHIWNEDPHDIINFGNLCTLNVSKCQSLLYIFPLSLCEDLGHLEMLVIESCEVEEIVAMEEGSMEHSFHFPQLNKLTLSRLTNLTRFYQGKHSLDCPSLKVLDVYYCAFDHLDLFSIEKVNFTLTCFSLSVFVMITCSYFIFGCLIFQLSRNLEELTINDTDLVEILNQENIFQKVQTLYLQYFDKTPAAFLNEYSHTIFPNLKMVQVRTSFFETLFPTNGFLGMQISKPIKTLKLLELEMLKHIWQEDFPLDHPLLQDLHELHVWNCPSLISLVPSSTSFTNLTILRVVNCKELNYLITSSTAKSLIQLTILSINNCEKMLDVVKIDDEKAEEDIIFKNLEDMVFISLSSLGSFCNGNQTFIFPSLLILMVVECPQMNIFSSGVTVTPCLKEIYVTGEGTSRWKGDINTTIQHLFLEKEVLHSNALNETIISSHLQVDELGGQDGIATDPEE 2088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01901 2088 SUPERFAMILY RNI-like 1368 1602 - -
Trre1g01901 2088 Gene3D Ribonuclease Inhibitor 589 878 IPR032675 -
Trre1g01901 2088 Gene3D Ribonuclease Inhibitor 1233 1515 IPR032675 -
Trre1g01901 2088 Pfam Leucine rich repeat 532 578 IPR001611 GO:0005515
Trre1g01901 2088 SUPERFAMILY L domain-like 1528 1854 - -
Trre1g01901 2088 SUPERFAMILY L domain-like 936 1231 - -
Trre1g01901 2088 SMART AAA_5 172 308 IPR003593 GO:0016887
Trre1g01901 2088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 406 IPR027417 -
Trre1g01901 2088 Gene3D Ribonuclease Inhibitor 472 588 IPR032675 -
Trre1g01901 2088 Gene3D - 139 301 IPR027417 -
Trre1g01901 2088 Gene3D Ribonuclease Inhibitor 932 1185 IPR032675 -
Trre1g01901 2088 Gene3D Ribonuclease Inhibitor 1554 1825 IPR032675 -
Trre1g01901 2088 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1303 1501 - -
Trre1g01901 2088 Gene3D - 309 396 IPR042197 -
Trre1g01901 2088 PRINTS Disease resistance protein signature 986 1002 - -
Trre1g01901 2088 PRINTS Disease resistance protein signature 342 356 - -
Trre1g01901 2088 PRINTS Disease resistance protein signature 248 262 - -
Trre1g01901 2088 PRINTS Disease resistance protein signature 175 190 - -
Trre1g01901 2088 Pfam NB-ARC domain 160 393 IPR002182 GO:0043531
Trre1g01901 2088 SUPERFAMILY L domain-like 464 876 - -
Trre1g01901 2088 SUPERFAMILY RNI-like 1867 2014 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01901 Trre-Chr1 15207229 15217902 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01901 176 642 WRKY Transcription Factor Family AT5G45050 23.420 2.98e-11 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01901 - - tpra:123924644 2583.52