Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01893 ATGAGTTCTTATAATTTGAGGAGTAACGGACCAAGAAATGAACTTTTACCAACTCTACCTTGGGGACGAACAGGTTGGAGGTCTTCACACAGAGAGAGACCCTCTGAACAACTACAAGTTCCCGTGGTTGGTTCTGCTGAAAATGATGATGACGTCGTTGAGACTTCGTCAAGAGACTTTGCTGAGGCGGTAGCAAATGCGAGGAGAACTCGCAGAAGAATTGAACATGCCTCAAATATGGAAAATGAAACCAGGCCAACTTATTTTATGGACAACAGAGACCGCAGTACTTTCCAACCAATTGATTCTATTTATATCCATTTGGAAGGAGGCAGCAGCAGTACTCAAGTGATTGAAAATGCCACAGAGCCACTTGATAGTGAGACTAACAAGGAAACTATTGAGCCTGAAAATGAAAGAGCTGAACCTCCTCCAAAAGAGGCTAGCATAAAATGTCCAATATGTATGAATCCTAGTGTGGAGGAAATGACAACAAGATGTGGCCATATTTTTTGCAAGAATTGCATCACAACTGCACTCACTGCATCTCGTAAATGCCCTACATGCGGAAAAGGGGCTTCTAAGAGAGGACTTGTCAGGGTGTTTCTTCCATCTACTAGAATTGCTCATGAATTAATGGTTTGTGGGTTTAACAAAAAAGGATCGATTTGTGCTCGGTTTGTTGCTTGTCCGGTTCCTATTGACGAATTGAACGTTCTTCTACTTCGCGCTAATGATCACTATTAA 747 0.4203 MSSYNLRSNGPRNELLPTLPWGRTGWRSSHRERPSEQLQVPVVGSAENDDDVVETSSRDFAEAVANARRTRRRIEHASNMENETRPTYFMDNRDRSTFQPIDSIYIHLEGGSSSTQVIENATEPLDSETNKETIEPENERAEPPPKEASIKCPICMNPSVEEMTTRCGHIFCKNCITTALTASRKCPTCGKGASKRGLVRVFLPSTRIAHELMVCGFNKKGSICARFVACPVPIDELNVLLLRANDHY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01893 248 SMART ring_2 152 189 IPR001841 -
Trre1g01893 248 SUPERFAMILY RING/U-box 151 192 - -
Trre1g01893 248 MobiDBLite consensus disorder prediction 123 146 - -
Trre1g01893 248 Pfam Zinc finger, C3HC4 type (RING finger) 151 189 - -
Trre1g01893 248 MobiDBLite consensus disorder prediction 1 39 - -
Trre1g01893 248 ProSitePatterns Zinc finger RING-type signature. 167 176 IPR017907 -
Trre1g01893 248 ProSiteProfiles Zinc finger RING-type profile. 152 189 IPR001841 -
Trre1g01893 248 MobiDBLite consensus disorder prediction 125 146 - -
Trre1g01893 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 213 IPR013083 -
Trre1g01893 248 PANTHER ELFLESS, ISOFORM B 24 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01893 Trre-Chr1 15161275 15166524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01893 43 207 C3H Transcription Factor Family AT3G07200 36.145 6.14e-25 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01893 K22651 - tpra:123891564 262.307