Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01892 ATGAATCCTCAAAATTTGAGAAGTAACAGACGAAGAAATGAAACTCTACCACCTTGGGAGTCTTCACAGAGAGAGGGACCCTTTGAACAACCACCAGCTACTTGGGGGACATCGACTTGGGTGTCTTCACAAGCGGAAGGACCCTCTGAACGATTTTCAGTTGCTTGGGCGCCACCAACTTGGGAGTCTTTACAGGGAGAGGGACCCTATGAACTGCCGCCAACTGCTTGGGGGGCACCAATTTTGTATGAACAGCCGCCAGCTGCTTGGGGGTCACCAACTTGCTATGAACAGCCGTCAACTGCTTGGAGGTCACCAACTTGGATCTCTTCACATGGAGAAGGGCCCTATGAACAGCCGCCAACTACTTGGGAGTCACCAACTTGGGTTTCTTCACAGGGAGAATGGCCCTATGAACAGCCGCCAACTACTTGGGGGTCACCAAGTTGGTTGTCTTCACAGGGAGAAGGGCCCTATGAACGGTCGTTAGCTGCTTGGGGGCAACCAAATTGGGCGTCTTCACATGAAGAGGGACCCTATGAACTGCCATCAGCTGCTTGGGAGGCACCAATTTGGTATGAATCGATATCAGTTACTACGGGATTACCAACTTGGCCGTCTTCCCAGGAAGAGGAATCCTATGAACAACCGCCAGCTGCTTGGGGGACACCAAGTTGGGTGTCTTCACCGGAAGAGGGGCCCTATGAACAAATCCAAGTTCCCACGGTTGACTTTGCTGAAAATGACGATGACGTCATTGAAACTTCGTCAAGAGATTTTGCTGAGGCTGTCGCAAATACGAGGAGAACTCGTAGAAGAATAGGACATGACTCAAATATGGAAAATCAAACCATGCCAACTTATAATTTTATGCACGAGAGAGGCAGCACCAGTGAAGTGATTGAAAATGAAACAACTGAACCTCCTCCAAAAGAGGCTAGCATAAAATGTCCAATATGTATGAATCCTAGTGTGGAGGAAATGACAACAAGATGTGGCCATATTTTTTGCAAGAATTGCATCACAACTGCACTCACTGCATCTCGTAAATGCCCTACATGCGGAAAAGGGGCTTCTAAGAGAGGACTTGTCAGGGTGTTTCTTCCATCAACTAGAATAATTGATGAAGAATGTATGTCAATTTTTGTTTATTAA 1155 0.4736 MNPQNLRSNRRRNETLPPWESSQREGPFEQPPATWGTSTWVSSQAEGPSERFSVAWAPPTWESLQGEGPYELPPTAWGAPILYEQPPAAWGSPTCYEQPSTAWRSPTWISSHGEGPYEQPPTTWESPTWVSSQGEWPYEQPPTTWGSPSWLSSQGEGPYERSLAAWGQPNWASSHEEGPYELPSAAWEAPIWYESISVTTGLPTWPSSQEEESYEQPPAAWGTPSWVSSPEEGPYEQIQVPTVDFAENDDDVIETSSRDFAEAVANTRRTRRRIGHDSNMENQTMPTYNFMHERGSTSEVIENETTEPPPKEASIKCPICMNPSVEEMTTRCGHIFCKNCITTALTASRKCPTCGKGASKRGLVRVFLPSTRIIDEECMSIFVY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01892 384 MobiDBLite consensus disorder prediction 113 156 - -
Trre1g01892 384 ProSiteProfiles Zinc finger RING-type profile. 317 354 IPR001841 -
Trre1g01892 384 PANTHER ELFLESS, ISOFORM B 296 371 - -
Trre1g01892 384 ProSitePatterns Zinc finger RING-type signature. 332 341 IPR017907 -
Trre1g01892 384 SMART ring_2 317 354 IPR001841 -
Trre1g01892 384 MobiDBLite consensus disorder prediction 1 54 - -
Trre1g01892 384 MobiDBLite consensus disorder prediction 32 49 - -
Trre1g01892 384 MobiDBLite consensus disorder prediction 121 156 - -
Trre1g01892 384 Pfam Zinc finger, C3HC4 type (RING finger) 316 354 - -
Trre1g01892 384 SUPERFAMILY RING/U-box 316 357 - -
Trre1g01892 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 377 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01892 Trre-Chr1 15155532 15157921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01892 247 372 C3H Transcription Factor Family AT3G07200 37.879 1.28e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01892 K22651 - tpra:123891564 242.276